Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U582995 and SGN-U582996 in the current build, Tomato 200607 #2

Unigene SGN-U316204

Unigene Basic Information

Unigene ID:	SGN-U316204
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316204
mRNA sequence:	Length: 2487 bp

>SGN-U316204 Tomato 200607 #1 (29 members)
GAACAACTTGTTCATTTTCTCTCTGAATAACATTTTCATACAAAAATGGCAGTTTCTTCAGGCACTGTATTTAGAATTAACCAGCACCCA
AGTTCTCCATACATGAAAACTCCAAGATTTTACAACTTCACAAAGAAAAAATTTCTTGTAAAAGCTTCTGTGAATGGCTCAGATGAAATC
AATGGGAAGATAGTAAGGAAGGAAGAAAAAGATAGTTTGCAGATTGATTTTTCAGGTGAAAAGCCACCTACACCATTTTTGGATACAATC
AATTATCCAAAACATATGAAGAATCTATCAAAAATGGATCTTGAACAGTTAGCTGCAGAACTAAGAGCAGAAATTGTGTATTCAGTGGCG
AATACCGGAGGTCATTTGAGTTCAAGTTTAGGTGTTGTGGATTTAACTGTGGCTTTGCATCATGTTTTTGATACTCCTGAGGATAAAATT
ATATGGGATGTTGGTCATCAGGCATATGCACACAAAATCTTGACAGGAAGAAGGTCTAAAATGCATACAATGAGAAAGACTTCAGGGCTA
GCACCTTTTCCTAAAAGGGATGAAAGTGTTCATGATGCATTTGGTGCAGGGCATAGTTCAACAAGCATCTCCGCTGGTCTTGGCATGGCG
GTTGCTCGAGATCTTTTAGGGAACAACAACCATGTCATATCTGTAATTGGAGACGGAGCCATGACTGCAGGACAAGCATACGAGGCCATG
AATAATGCAGGATTCCTTGACTCGAATCTGATAGTCATATTGAATGATAATAAACAAGTTTCTTTACCGACCGCAACTTTAGATGGCCCT
GCAACTCCAGTAGGAGCCCTCAGTAGTGCCTTAAGCAAACTCCAAGCTAGTCTTAAGTTTAGGCAACTCCGCGAAGCTGCAAAGACTATA
ACAAAGCAAATTGGACCTCAAGCACATGAAGTTGCAGCTAAAGTTGATGAATATGCAAGGGGAATGCTTAGTGCATCTGGTTCCACACTT
TTTGAGGAGCTAGGATTATATTACATCGGTCCAGTAGACGGACACAATATCGAAGACTTGATCACTATTTTAGAGAAGGTAAAAGCATTG
CCAGCACCAGGACCAGTTCTAATTCACATTGTAACAGAGAAAGGGAAAGGTTATCTTCCTGCAGAAGCAGCAGACGATAAAATGCATGGG
GTGGCACAGTTTGATCCGAAAACAGGAAAGCAATTTAAGGCCAAGTCGCCTACGTTGACATATACTCAGTACTTTGCTGAATCACTGATT
AAAGAAGCCGAAAATGATAACAAGATTGTAGCTATCCATGCTGCAATGGGTGGTGGAACCGGCCTCAATTATTTCCAAAAACAATTTCCA
GAACGTTGTTTTGACGTTGGCATTGCTGAGCAACATGCAGTTACTTTTGCAGCAGGCTTAGCTACAGAAGGTCTAAAACCATTTTGTGCT
ATCTACTCCTCGTTCTTACAACGAGGCTACGATCAGGTGGTGCACGATGTGGATCTTCAGAAGTTACCTGTCCGGTTTGCAATGGACCGA
GCTGGTTTGGTAGGTGCAGACGGTCCAACGCATTGTGGAGCATTCGATGTGACATACATGGCTTGTTTGCCAAATATGGTAGTCATGGCT
CCATCGGACGAAGCAGAGCTAATGCACATGGTTGCAACAGCAGCAGCTATTGATGATAGGCCTAGTTGTTTCCGATTTCCTAGAGGAAAT
GGAATTGGTGCAATTCTTCCTCTAAACAATAAAGGCATACCAATTGAGGTCGGTAAAGGAAGAATACTGAGAGAAGGTGAAAGAGTTGCC
ATTTTGGGATATGGTTCGATAATACAACAATGTTTGGGAGCTGCAGACATCCTAAACTCCCATAACGTAAGAGTAACAGTAGCTGATGCT
AGGTTCTGCAAACCATTGGATGCTGATCTTATTAGGAGTTTAGCCAAAGAACATGAAATCTTGATCACTGTCGAAGAAGGATCAATCGGA
GGATTTGGCTCACACGTGTCTCATTTCTTAAGCCTAAACAGCATTTTGGATGGACCCCTTAAGTTGAGGTCAATGTTACTTCCAGATAGA
TACATTGATCATGGTTCACCAGTTGATCAAATTGAAGCAGCTGGTTTATCATCAAGACATATTTCTTCTACAGTTCTAACATTATTGGGA
AGGCCAAAAGAAGCTATGGTAGTAAACTAAATTTCCAAAAGGCTATAAGGTTCTACGGATCGATGCCTTCTGCTTCATCCGAGAGGGAAG
AATCATAGATATGCCGATCATTAGAAGGAAGAACCTTCATACATTATTGGCAAGTGAAATTCTATAGAATTTGTGGTAGTAGTGTAAATA
AGTGACATTTCATGTAGTGATGATCATATTGTAGAAAGTGTTGGTGAAATAAGATATTATTTACTATTATGTAGTAGTTTAACGTAGTAA
TCATATTGTTAAATCTACTATATATAAATATTAGTTCTTCTAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	8
undefined	vShabmRNA		29	1

mRNA member sequences (29)

Alignment image suppressed for unigene with 29 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 2 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101625	Transketolase C-terminal Transketolase central region Transketolase C-terminal-like	56
2	119201	Transketolase central region Deoxyxylulose-5-phosphate synthase - Molecular Function: 1-deoxy-D-xylulose-5-phosphate synthase activity (GO:0008661) - Biological Process: terpenoid biosynthesis (GO:0016114) Transketolase C-terminal Transketolase C-terminal-like	19
5	129551	Transketolase central region Deoxyxylulose-5-phosphate synthase - Molecular Function: 1-deoxy-D-xylulose-5-phosphate synthase activity (GO:0008661) - Biological Process: terpenoid biosynthesis (GO:0016114) Transketolase C-terminal Transketolase C-terminal-like	19

Preceding Unigenes (3)

Unigene	Build
SGN-U215419	Lycopersicon Combined #3
SGN-U215420	Lycopersicon Combined #3
SGN-U223839	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: