Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U571200 in the current build, Tomato 200607 #2

Unigene SGN-U316444

Unigene Basic Information

Unigene ID:	SGN-U316444
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316444
mRNA sequence:	Length: 1324 bp

>SGN-U316444 Tomato 200607 #1 (28 members)
GCAAATTCCCTTTCCTCATCCCTTACGGCTTGCTTACACACAAATTCTCCTCTCTACCAATGGAGTCCCTAACTCTTTCTACTTCTCTAT
CTCCTCACTGTCCCTCTTTCAATCTCCGCCATGCCTCTCTTCCTAAGCTTTCGCCCACTTTTTCACCATACCCATCTCGCAAAACACCCT
TATCCCTCAAATCTTCACTCACTTCTCACCAATCCACTTCAAAACCCCTTTCTGATTCTCATCTAGTTGCGGATGATAAATTGTCCTTGC
TACTTGCCTCTGCTCCTCAGTCCCCGGGGATGGCTATGCGTGGTGCTGAAGGAGACGCAATGGGGCTGTTGCTTAGGGAGAGGATAATTT
TCTTGGGTAGTAGCATTGATGACTTCTTCGCTGATGCTATTATTAGTCAGTTGTTGTTGTTGGATGCTCTGGATTCCACTAAAGATATTA
GGCTCTTTATTAATTGCCCTGGTGGCTCACTCAGCGCAACAATGGCTATCTTCGACGTTGTGCAGTTGGTGAGGGCTGATGTATCCACAG
TTGCACTTGGCATTTCAGCTTCCACAGCTTCAATAATCCTTGCCGGTGGCACCAAAGGAAAACGCTACGCAATGCCTAATACTCGAATTA
TGATACATCAACCACTTGGAGGTGCCAGTGGTCAAGCAATAGATGTAGAAATTCAAGCCCGAGAAATAATGCATAACAAGGACAATGTTA
TCAAAATCTTTTCCAATTCCACTGGACGATCATATGAACAAGTTCAGAAAGATATTGATAGAGATCGTTACATGTCCCCAATTGAAGCTT
TAGAATTTGGGCTAATTGACGGTGTAATTGACAGAGATAGCATCATTCCACTTATGCCTGTCCCTGAAAAGGTTAAACGTACATTGAGAA
ATCAAGATTTGATCCAAGACCCTATGAAATTTTTGAACCCAGATATCCCTGATGATGAGATATATTAGCTGGTGCAACAGGTAGGGATGG
CTCTTGGCTCAGAAATATCGCATACCTAACATGCAGCGTTGTCCTCATCGCCATTGTTTGTTGTAGAATTTTCTAGGAGTTACAACGCAG
ACCATTCATTCAAGGGAGATTTTGGAGAATGAATTGCAATGAATTTGATATTAAAGCCATTATTGACATTTTGTCTACCCTTTATTTTCT
ACTTAGTAACTAGTTTGTTTCCTAGATTTCTATAATTCCTCTTTTCTCCCTTTTGTTATTTTCATTGAGAGTGGATGCTTGGTGATGGTG
GATGGTTCAATACTATTAATTTCAACCATATATTTCCCAGTTTTCTGCCCTAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	LA	Leaf Mature leaves	6589	5
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (28)

Alignment image suppressed for unigene with 28 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101592	Peptidase S14 ClpP - Biological Process: proteolysis (GO:0006508) - Molecular Function: endopeptidase Clp activity (GO:0008462)	65
2	118548	Peptidase S14 ClpP - Biological Process: proteolysis (GO:0006508) - Molecular Function: endopeptidase Clp activity (GO:0008462)	57
5	132908	Peptidase S14 ClpP - Biological Process: proteolysis (GO:0006508) - Molecular Function: endopeptidase Clp activity (GO:0008462)	5

Preceding Unigenes (1)

Unigene	Build
SGN-U215977	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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