Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U572412 in the current build, Tomato 200607 #2

Unigene SGN-U316785

Unigene Basic Information

Unigene ID:	SGN-U316785
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316785
mRNA sequence:	Length: 2198 bp

>SGN-U316785 Tomato 200607 #1 (21 members)
CGAGGTCCATCTGCAGTAACCCTTGGCCAACGACCTCCGCCGCCGGGAAATATTTACATCTCCGGCTACCGACGGATTTGTATAACGTAT
TTAATCTTCATTATACATCCGAACGTAGGAAATGGAGGTTCTTCGGTTTACCGCCGTGAAATCATTGAATTCATGCGTCCGTCCAGAATT
CACGGCGATGAGTTCCGTCATTGTTCCTATTAGCACTGTGAAAGTTTCTGGAACGAGGAAAAGCAAAAAGAAGGCGCTTATTTGTGCTAA
GGCGACGGAGATCTTGTCATCGCCAGCTACGGTAACGGAACCGTTGAAGGCGGAGCCGGCAGAGGCACCGGTTCCGTTGCTACGAGTTTC
TCCGAGCTCGTTGCAGTGTGAGCCGGGATATTTGTTACCGAATAGTCCGGTTTTAGGTACGGGTGGTGTGACCGGGTATGAGTATCTGAC
GAACATCTTGTCATCGAAAGTTTATGATGTAGCTTATGAGACGCCTTTGCAGAAAGCTCCTAAGCTGTCAGAAAGATTGGGAGTTAATGT
ATGGCTAAAAAGAGAGGATCTTCAGCCGGTGTTTTCGTTCAAAATCAGAGGAGCTTACAATATGATGGCAAAACTCCCGAAAGAGCAGTT
GGAAAAAGGGGTTATATGCTCATCAGCAGGAAACCATGCACAAGGTGTTGCATTATCTGCTCAGAGACTTGGCTGCGATGCTGTGATTGT
TATGCCTGTTACTACACCAGACATCAAATGGAAATCAGTTAAGAGATTGGGTGCTACTGTTGTTCTTGTTGGGGACTCATATGATGAAGC
TCAAGCATATGCCAAAAAGCGGGCTGAATCTGAAGGCCGCACATTCATCCCTCCTTTTGATCACCCAGATGTCATTGTAGGGCAGGGTAC
AGTAGGGATGGAGATAAATCGCCAACTCAAAGATAACATTCATGCAATCTTTGTGCCTGTTGGAGGAGGGGGGCTTATAGCTGGTATTGC
TGCTTATTTGAAAAGGGTTGCCCCAGATATAAAGATTATTGGAGTTGAACCACTTGATGCTAATGCGTTGGCATTATCATTACATCATGG
TCAGAGAGTAATGCTGGACCAAGTTGGGGGTTTTGCAGATGGTGTAGCTGTTAAAGTGGTTGGTGAAGAGACTTATCGTCTGTGCGAGGA
ATTAATAGATGGCGTTGTCCTAGTTGGTCGTGATGCTATATGTGCATCTATAAAGGACATGTTTGAAGAGAAAAGGAGCATACTAGAGCC
GGCAGGTGCACTTGCTCTTGCTGGAGCCGAGGCATACTGCAAGTATTATGGCCTCAAGGGTGAAAACGTAGTAGCAATAACTAGTGGAGC
CAACATGAACTTTGACAGGCTTAGATTGGTAACAGAACTCGCAGATGTTGGTAGACAGCGGGAAGCTGTTCTTGCTACTTTTATGCCAGA
AGACCCAGGAAGCTTCAAAAAGTTCGCTGAAATGGTAGGACCAATGAATATCACTGAATTCAAGTACAGATACAACTCTGATAAAGAAAG
AGCTCTTGTACTTTACAGTGTTGGACTTCACACAATATTAGAACTTGAAGGAATGGTGGAGAGGATGGAATCAGCAGATCTGCAAACCAT
TAATCTTACAGACAATGACTTGGTCAAAGATCATCTTAGGCATTTGATGGGTGGTAGAACAAATGTTCATAATGAGCTTTTGTGTCGATT
CACTTTTCCTGAGAAGCCTGGTGCTTTGATGAAGTTTTTAGATGCTTTCAGCCCACGTTGGAATATAAGTTTGTTTCATTATCGTGCACA
GGGAGATACTGGTGCAAATGTGCTAGTCGGGATCCAAGTTCCACCGGATGAGGTAGTTGAGTTTGAGGGACGGGCAGACAGTCTTGGTTA
TGAATATGCAATGGAGAGTCTCAATGAGGCATACCAGCTCATAATGCATTGAAAAAAGGTGTTGCCTGTTATGGCTTGTTCTGGGTCCTC
ATTGCAACACCGACTTCACTTTCTCCTGGTTAGTCAGATATTCTGAATCCTCCTCGACGATGGAAGATTGCCTGTTTTATATACAACCAG
TGTACTAGATGATTTTGGGCTAGTCTTTATCTTGTGTACATAAGCTATTTGTATGTTGTTATCTAAAGACCTCTACTTCCATGAATAAAC
CATTTCACTTTAAAGCTAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
EF026088	chloroplast threonine deaminase 1 precursor

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (21)

Alignment image suppressed for unigene with 21 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101578	Pyridoxal-5&apos -phosphate-dependent enzyme beta subunit - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	70
2	119604	Threonine dehydratase I - Molecular Function: threonine ammonia-lyase activity (GO:0004794) - Biological Process: isoleucine biosynthesis (GO:0009097) Pyridoxal-5&apos -phosphate-dependent enzyme beta subunit - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Serine/threonine dehydratase pyridoxal-phosphate-binding site - Biological Process: amino acid metabolism (GO:0006520) Threonine dehydratase C-terminal - Molecular Function: threonine ammonia-lyase activity (GO:0004794) - Biological Process: isoleucine biosynthesis (GO:0009097)	14
5	129927	Threonine dehydratase I - Molecular Function: threonine ammonia-lyase activity (GO:0004794) - Biological Process: isoleucine biosynthesis (GO:0009097) Pyridoxal-5&apos -phosphate-dependent enzyme beta subunit - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Serine/threonine dehydratase pyridoxal-phosphate-binding site - Biological Process: amino acid metabolism (GO:0006520) Threonine dehydratase C-terminal - Molecular Function: threonine ammonia-lyase activity (GO:0004794) - Biological Process: isoleucine biosynthesis (GO:0009097)	14

Preceding Unigenes (2)

Unigene	Build
SGN-U215899	Lycopersicon Combined #3
SGN-U215900	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: