Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U566109 in the current build, Tomato 200607 #2

Unigene SGN-U317342

Unigene Basic Information

Unigene ID:	SGN-U317342
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317342
mRNA sequence:	Length: 2030 bp

>SGN-U317342 Tomato 200607 #1 (20 members)
TTTCAGCAGCTCTCACTCTTTCTCTCTCTAGAACCAGTGGTCTCAAGCGGTCACTCCATTTTCTCTCTCTAGAAATTGTAGAGTCAGTGA
CGAACGAATTCAGTGCTATTTACTGCTTGTGGAGTGTAATGGGAGAAGACCCTGTTGCTGCTTTTTTGCTTGCGGCGCAAATGTGAATGC
TGTGAAAATCTAGGGTTTTTTTTTGGGGGGGATTTTAGATCTTTTGGTAGATCTAGTTTTTCTTGAGATTCTCACTCTAATTGGATTGAC
GAGTTCATTTCTACCGCTGTTTAAGCTGCCGCCGCCACCGGGTTTTACGAAATGGCGACGCCTTTTCACTTGCCAGTCACTGCTGCTCAG
GTGGGGACATACTTCGTGGGCCAGTATTATCAGATGTTACAGACCCAACCGGATTTTGTTCACCAGTTCTACAGTGATGCTAGTACTGTG
CTTCGAATTGATTCCAGCACCAGAGAGACTGCTTCAGGAATGCTGCAAATTCACACCCTTGTCACGTCGCTACAGTACACTGGAATAGAG
ATAAAAACACTCCATTCCTTGGAATCATGGAATGGTGGTGTCCTTGTGATGGTTTCAGGTTCTGTCAGTGTGAAAGGTATCAATAGGAGT
AGGAAGTTCGTTCAATCATTTTTCCTTGCACCCCAGGAAAAAGGATACTTTGTCCTCAATGATATCTTTCACTATGTTGATGAGGAGCAA
ATTCTTCAGCAACCATTGGCCTATCTAGCACATTCGAACCTTGATTCAAAGCTGAATGTTTCCAATGCACTTCAGGAGCAAGTGCCCAAC
TACATGTTTGGTGGAGAAATCCAAGCAAGGGAGTTTGTTGATGCTCCTAAAATTGAAGATAACGGGCCAGTCAATAACTATAGTTTTCCG
GAGGAACGGCTTCAGCATGTCTCTGAAGCTGAGAATATCCTTGAAGATAATTTTGCGGTTCAGTCGAACGGCCCACTTCAGAGTACAATT
AATGCAGTACAAGACCATTTATCCTGCCCTGTTGAGGAACCTGTTGCAGAGCCCCAAAAGCATACTTATGCTTCTATTCTACAAGTTACT
AAAGGGAATTCTGCACAAGGACTGGCACAGTCTTCTCTCAACAAATCTACACCTCCTTCAGAGTGGCAACATGTGCCAGAGCCTCCTGCT
CTGCCATCAGTTCATTCGACTAATACTATTGAGAGGTATACCGAGGCAACAGAAGAGGCTTCAGCTGTTGAAGATGAAGTTGAAGTCAAG
TCTGTATATGTCAAAAATGTTCCTACCACAATGGCTGCTTATGAAATTGAGGAGGAATTCAAAAAGTTTGGTAAATTAAAGCCTGATGCT
GTTGCCATTAGAACGCGAAAGGACATTGATGTATGCTATGCATTTGTCGAATTTGAAAATGTAACTGGGGTTCAGAATGCAATTGAGGCA
TCTACTGTTCAGATTGGTGGACACCAGTTGTACATTGAAGGAAGGAGACCGAACAGAAATAACTTAATTCGAGGAAGAGGAAGGGGTAGA
GGCAGAGTTAGCTACTCCATGGATGGAAGGGGGCGCTATGGTGGCCGTGGTTTTGGGAGAGGTGGTCAAGACGGAGGTGACCGTGATTAT
GGCAGATCAAGGGGAAATGGTTATTATAGACAAACTCCTCGGCAGGAAAGAGCTTACCCTAGCAATCAGCAAAGCTTGAGAAATGAGCAA
TACTCATGGGAATAAGCTGGAAGTTGAATTCATGAAGGACAAACAATACACCTTCAGTACAAGCCATGTTGCCAACAGCTTTTTTGTCTT
CATAGTTCTCCAAAACATTAGTATACTTTGAGAAGCATCAAAATTTAGATTTGTGGAAGGAAGCATCCCTAATTCATATAATTTTTTTGG
CAGAAATAGCAAGTGTTGGTTTTCAGTACATGAATAGACTTTTACTTGAAGGATTATTTATGCAGTTCTGACCTGCTAGTCGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (20)

Alignment image suppressed for unigene with 20 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 7 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	118744	Nuclear transport factor 2 - Molecular Function: transporter activity (GO:0005215) - Cellular Component: intracellular (GO:0005622) - Biological Process: transport (GO:0006810) Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	32
5	132106	Nuclear transport factor 2 - Molecular Function: transporter activity (GO:0005215) - Cellular Component: intracellular (GO:0005622) - Biological Process: transport (GO:0006810) Nucleotide-binding alpha-beta plait - Molecular Function: nucleotide binding (GO:0000166) RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	6

Preceding Unigenes (2)

Unigene	Build
SGN-U219321	Lycopersicon Combined #3
SGN-U223248	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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