Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U564859 and SGN-U564860 in the current build, Tomato 200607 #2

Unigene SGN-U317629

Unigene Basic Information

Unigene ID:	SGN-U317629
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317629
mRNA sequence:	Length: 2034 bp

>SGN-U317629 Tomato 200607 #1 (20 members)
AATGGCTGGTGCTCTGTCTCCGGCCACCACTCTCCGCCTTAAGCCCTTCTACGCCGTCCGGTTCTTCAGTCATTACCGAAGACCTATCAA
AGTCTTAAACCCCAATTTCTACTCATCGTACCCTCCACAGCTGCCTCCAGCACCCTACTTGAGCCGTCGACGGAGCTTTTGCTCTGTGGT
TTCCGCCGCTATTTCATCCGGAGAAGCAGTTGAAAGACCCAAATTTGAAAATATTGAGGCAAAAGAGGGGGTAAAAACTGAAAAAGTTGG
GGAATTTCGGAAAAGGTTGAGGGTTGCGGACATAAAGGGAGGACCTGAAGAAGGTTTGGACCGTCTTGGTGAAACTTTGGTGGTTAGAGG
ATGGGTTCGCACGGTTAGGGCTCAGAGCAGTGTGACGTTTATTGATATTAATGATGGTTCTTGTCTTTCAAATATGCAATGTGTTATGGG
TTCTGATGCTGAGGGTTATGATCAGGTGGAGAATGGCTTAATTTCAACTGGTGCATCAGTATGGATTGAAGGTACTGTCGTCAGCAGCCA
AGGGTCAAAGCAGAAAATTGAGTTGAAGGTTCAGAAACTTGTAGTGGTTGGTAAAAGTGATCCTTCTTTCCCCATCCAGAAGAAAAGAGT
CAGCAGAGAATTCTTGAGAACAAAGGCTCACCTTCGCCCTCGAACAAACACTTTTGGTGCGGTTTCGAGGGTGAGGAATGCTTTGTCCTA
TGCCACACACAAGTTTTTCCAAGAAAATGGCTTTGTTTGGGTCTCTAGTCCAATAATCACTGCTTCTGATTGTGAAGGAGCTGGCGAGCA
ATTCTGTGTTACTACATTGATTCCAAACTCCAATGAAGGTGGAGATTCACCAGTTAGTGCTATTCCTACTACTGAGTCTGGTTCTGTTGA
CTGGTCACAAGACTTCTTTGGGAAACGAGCATATTTAACCGTGTCTGGGCAACTCAATGGTGAAACATATGCTACTGCGCTCTCCGATAT
CTACACCTTTGGCCCTACATTCAGAGCAGAAAACTCTAACACTTCCAGGCACTTGGCTGAATTCTGGATGATTGAACCAGAACTAGCTTT
TGCGGACTTGGATGATGACATGGCCTGTGCTACTGCCTATCTCCAGTATGTAGTGCAACATGTGTTGGAGAATTGCAAAGAAGATATGGA
TTTTTTTGACACCTGGATTGAGAAAGGGATCATCAATAGACTTACCGATGTTGTTGAGAAGAACTTTGTGCAGTTGAGTTACACTGATGC
TGTTGAGCTTCTATTGAAAGCAAAAAAGAAGTTCGATTTCCCGGTGAAATGGGGATGTGATTTGCAAAGTGAGCATGAAAGATATATCAC
CGAGGAGGCTTTTGGTGGTTGTCCTGTGATTATTAGAGACTATCCGAAGGACATCAAGGCATTTTACATGCGGCAGAACGATGATGGGAA
GACTGTTGCAGCCATGGATATGTTGGTACCTCGGGTTGGAGAACTTATTGGTGGAAGTCAAAGAGAGGAACGCCTTGAATACCTAGAGGA
ACGTTTGGATCACATGAACCTCAACAAAGAAAGCTTTTGGTGGTATCTTGATCTGCGACGTTATGGTTCAGTTCCTCATGCTGGATTTGG
ACTAGGCTTTGAAAGGCTCGTTCAATTTGCGACTGGAATAGACAATATCAGAGATGCAATACCTTTCCCTCGAACACCTGGCTCTGCAGA
GTTTTGAGTTTTGACCTTAAAAGGGTACTACTACTTTATAAAAAATGAATCGGTCCAAAAAGGTGCAGTGTCACCAATACTACCTTCTGT
AATCCTTTTTTTGTCTTTTCACTATTCATTCATTATATAGATTTTGTAGAGCGTGTTAAAATGGTGGAAGTTATAGTCATTTCTCCGAAA
TAATTAGATATATGGAACACACCAAAAAACTGTGTTTTTCATAAAAACTTATAAGTTGTAGGGTTCCCAATGTAATGGTGCCATTTATAA
TGGCTTTTTCCCCCTCTATAAAGCACTGCACGGAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	8
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (20)

Alignment image suppressed for unigene with 20 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 10 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101603	tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418)	62
2	119485	tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418)	15
5	132765	Aminoacyl-transfer RNA synthetase class II - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) nucleic acid binding OB-fold tRNA/helicase-type - Molecular Function: nucleic acid binding (GO:0003676) Asparaginyl-tRNA synthetase class IIb - Molecular Function: asparagine-tRNA ligase activity (GO:0004816) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: asparaginyl-tRNA aminoacylation (GO:0006421) tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Aspartyl-tRNA synthetase class IIb - Molecular Function: aspartate-tRNA ligase activity (GO:0004815) - Molecular Function: ATP binding (GO:0005524) - Biological Process: aspartyl-tRNA aminoacylation (GO:0006422) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U216063	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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