Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U564301 in the current build, Tomato 200607 #2

Unigene SGN-U317843

Unigene Basic Information

Unigene ID:	SGN-U317843
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	317843
mRNA sequence:	Length: 2680 bp

>SGN-U317843 Tomato 200607 #1 (19 members)
GGATAAAAACACACTAAATATTGAGACAAAAATACTGTCATCTAAAACCCTAGCCGGAAACTTATCTGAGATGGGCGATTCTTCGACCGC
CGGCAACGGAGACAATCTCTCGCCGGCCTCTCCCAAACTTCCGATTCCCGGCAAAAGAAACATCCTCATCACAAGCGCTTTGCCGTATGT
CAACAACGTTCCTCATCTCGGAAACATCATCGGAAGTGTGTTGAGTGCGGATGTCTTCGCGAGATACTGTAGACTTCGGGATTACAATAT
CATATACATGTGTGGTACTGATGAATATGGCACAGCTACAGAGACTAAAGCCTTGGAAGAAAATTGTACTCCCAAGCAAATTTGTGACAA
ATATCATGCAATCCATAGAGAAGTGTATAAATGGTTTAATATAAGCTTTGATCACTTTGGACGCACATCAACTCCGCAACAGACCGAAGT
TTGTCAGGCGATCTTCAAAAAACTCTGGGAGAATAATTGGCTCTCTGAGAACACCATGCAACAGCCGTACTGTGAGACATGCAAAAAGTT
TTTGGCTGACCGGCTTGTAGAGGGTAACTGTCCGACACCAGGTTGCAACTATGATTCTGCACGAGGAGATCAATGTGAGAAGTGTGGGAA
GCTCTTAAATCCCACCGAATTGAAGGATCCAAGATGCAAGGTTTGCCGTAACACTCCATGCATCCGAGATACAGATCATTTGTTTCTTGA
GCTCCCTTTGCTGAAGGATGAATTAGAAGCATACGTCAACGACCTGTCAGTGGCTGGAGGATGGAGTCAGAATGCTATCCACACTACACA
TGCTTGGCTTAGAGAAGGACTGAAGCCAAGGTGTATAACTAGAGATTTGAAATGGGGGGTTCCAGTTCCACATGAAAAATATAAGGACAA
GGTTTTTTACGTGTGGTTTGATGCTCCTATTGGATATGTATCTATAACCTCATGCTACACAACTGAGTGGGAGAAGTGGTGGAAGAATCC
AGAGAATGTGGAGCTCTATCAGTTTATGGGCAAAGATAATGTGCCTTTTCACACTGTGATTTTCCCATCTACGCTTCTTGGAACTCGTGA
AAACTGGACTCTTATGAAGACAATTAGTGTAACAGAATACTTGAACTATGAAGCAGGCAAATTCTCAAAGAGCAAGGGCGTAGGAGTATT
TGGTAATGATGCAAAAGAGACAAACATTCCTGTAGAAGTTTGGAGATATTACTTGCTAACAAACAGGCCGGAGGTGTCAGACACTTTGTT
TAGTTGGGTGGATTTACAAGCAAAGCTGAACAGCGAGTTGCTAAACAACTTAGGCAATTTCGTCAATAGAGTCCTGAGTTTCATTGCAAA
AGATCCGGCTTCAGGTTATGGTTCCATAATTCCCAATCCAGAAGGAGCTGAATCACACCCTTTAACTAAGGCCTTAGGTGAAAAAGTTGG
AAATTATGTGGAAGAATACATAGAAGCTATGGAGAAGGTTAAATTAAAGCAGGGCTTGAAGATTGCTATGTCTATTTCTGGAGAAGGAAA
CGGTTATTTGCAAGAGAGCCAATTCTGGAGACTTTACAAGGAAGATAGGCCTTCTTGTTCCATTGTGATGAGCACTGCTTCCGGCCTAGT
ATATCTTCTTGCATGTCTTTTAGAGCCATTTATGCCATCCTTTTCACGGGAAGTGCTTAAGCAGCTTAACTTTCCTCCTGAAACAAAACC
TTCACTGTCTGATGACAGAGGTGACATAGAAAAGAGCAAAAGACCATGGAATATCCTACCTGCAGGTCACAAAATTGGAATACCAACACC
ATTGTTCAAAGAACTGAAAGATGAAGAAGTTGAATTCTACAGAGAAAAGTTTGCTGGAAGTCAGGCAGATAGGAATTTGAAGGCTGAAAC
TGAGGCAAGGAAGATCACTGATCAGTTGCACAAAGCAAAAATATCAGATGCTAATAAGAAGAAAGAACGTGCTACAAAATCTTCTGAAGC
CAAAGCTAAGGGTTCAGCCTCTGTTGAAGCAGAAATTTCGATTAGCAGACTTGATATTCGTGTTGGTCTCATTACAAGAGCACAGAAGCA
TCCCGATGCTGATTCTTTGTATGTTGAAGAGATTGATGTTGGTGAAGCTCAGCCCAGAACTGTCGTTAGTGGCCTCGTAAAATATATTCC
TCTGGAGGAAATGCAGAATCGAAAGGTCTGTGTTCTATGCAACCTAAAACCAGCCAGCATGAGGGGCATAAAATCCCAGGCAATGGTTCT
TGCTGCTTCTAATAGTGATCACACTAAGGTTGAACTAGTTGAGCCGCCTAAGGATGCTGCAATTGGTGAACGAGTTATGTTCCCTGGGTT
AGATGGCAAGGCGGATGATGTCTTGAATCCTAAGAAGAAGGTTTGGGAAACTCTTCAGGTGGATCTGCACACAAATAAGGAGTTGGTTGC
TTGCTATAAAGATTTGCCACTCACCACTTCTGTTGGTGTTTGCAAGGTCACATCCATTTCTGAAGGATCGATTAGGTAAATTTTTTCTTT
GGCGGATGAACTAGAGAGGGGATTTAAGGATTTTGTTTTAATTCTTTTCACATTTTTCATTTCTACACAATGTTATACAATCAAACTTTC
CACTATGATTGAGTGGAGTTGGAAGGGAAATGAGTATTTGAAGTGTTCTTGTCAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (19)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 7 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P120623 (835 Aa)

DKNTLNIETKILSSKTLAGNLSEMGDSSTAGNGDNLSPASPKLPIPGKRNILITSALPYVNNVPHLGNIIGSVLSADVFARYCRLRDYNI
IYMCGTDEYGTATETKALEENCTPKQICDKYHAIHREVYKWFNISFDHFGRTSTPQQTEVCQAIFKKLWENNWLSENTMQQPYCETCKKF
LADRLVEGNCPTPGCNYDSARGDQCEKCGKLLNPTELKDPRCKVCRNTPCIRDTDHLFLELPLLKDELEAYVNDLSVAGGWSQNAIHTTH
AWLREGLKPRCITRDLKWGVPVPHEKYKDKVFYVWFDAPIGYVSITSCYTTEWEKWWKNPENVELYQFMGKDNVPFHTVIFPSTLLGTRE
NWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDAKETNIPVEVWRYYLLTNRPEVSDTLFSWVDLQAKLNSELLNNLGNFVNRVLSFIAK
DPASGYGSIIPNPEGAESHPLTKALGEKVGNYVEEYIEAMEKVKLKQGLKIAMSISGEGNGYLQESQFWRLYKEDRPSCSIVMSTASGLV
YLLACLLEPFMPSFSREVLKQLNFPPETKPSLSDDRGDIEKSKRPWNILPAGHKIGIPTPLFKELKDEEVEFYREKFAGSQADRNLKAET
EARKITDQLHKAKISDANKKKERATKSSEAKAKGSASVEAEISISRLDIRVGLITRAQKHPDADSLYVEEIDVGEAQPRTVVSGLVKYIP
LEEMQNRKVCVLCNLKPASMRGIKSQAMVLAASNSDHTKVELVEPPKDAAIGERVMFPGLDGKADDVLNPKKKVWETLQVDLHTNKELVA
CYKDLPLTTSVGVCKVTSISEGSIR

SignalP predicts non-secretion with a score of 0.033

IPR001093 IMP dehydrogenase/GMP reductase
IPR002547 t-RNA-binding region
IPR002304 Methionyl-tRNA synthetase, class Ia
IPR002300 Aminoacyl-tRNA synthetase, class Ia

Prediction based on longest six frame method

>SGN-P247061 (835 Aa)

SignalP predicts non-secretion with a score of 0.033

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102108	Nucleic acid-binding OB-fold subgroup Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) t-RNA-binding region - Molecular Function: tRNA binding (GO:0000049)	22
2	120034	t-RNA-binding region - Molecular Function: tRNA binding (GO:0000049) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	11
5	131453	t-RNA-binding region - Molecular Function: tRNA binding (GO:0000049) Aminoacyl-tRNA synthetase class I - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Aminoacyl-tRNA synthetase class 1a anticodon-binding Methionyl-tRNA synthetase class Ia - Molecular Function: methionine-tRNA ligase activity (GO:0004825) - Molecular Function: ATP binding (GO:0005524) - Biological Process: methionyl-tRNA aminoacylation (GO:0006431) Methionyl-tRNA synthetase dimer-forming - Molecular Function: tRNA binding (GO:0000049) - Molecular Function: methionine-tRNA ligase activity (GO:0004825) - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein biosynthesis (GO:0006412) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	7

Preceding Unigenes (3)

Unigene	Build
SGN-U219189	Lycopersicon Combined #3
SGN-U222348	Lycopersicon Combined #3
SGN-U226538	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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