Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U585120 in the current build, Tomato 200607 #2

Unigene SGN-U318328

Unigene Basic Information

Unigene ID:	SGN-U318328
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	318328
mRNA sequence:	Length: 1400 bp

>SGN-U318328 Tomato 200607 #1 (17 members)
GTCGTCTAAGGGGCTTTTGTATTTGGGTATGGGTGTTTCTGGTGGAGAAGAAGGGGCGAGGAATGGACCTTCGCTTATGCCTGGTGGGTC
TTATGGGGCTTATACGAATATCAAAGATATTCTTGAGAAGGTTGCAGCTCAAGTTGAGGATGGGCCTTGTGTTACTTATATTGGTGAAGG
TGGGTCGGGGAATTTTGTGAAAATGGTGCATAATGGAATTGAATATGGTGATATGCAGTTGATTTCGGAAGCTTATGATGTGTTGAAGAA
TGCGGGTGGGTTGAGTAATTCTGAATTGGCTGATATTTTCGCCGAATGGAACCGTGGGGAATTGGAGAGCTTTTTGATTGAAATTACAGC
GGATATATTCAATGTGAAGGATGAATTGACTGGAAATGGGGAGTTAGTGGACAAGATTTTGGATAAGACAGGAATGAAGGGGACGGGGAA
ATGGACTGTGCAGCAGGCGGCGGAGCTGTCTATTGCAGCTCCGACAATTGCTGCTTCGTTAGACAGTAGGTACATGAGTGGATTGAAGGA
TGAGAGGGTAGAAGCCTCAGAGATTTTTAGGAAGGAAGGTTTAAAGGAGGAAATAAGTTCTGATATTAATGGTATTAGCAGTGTTGATAA
GAAGAGATTGATTGATGATGTGAGGCAGGCATTGTATGCGTCGAAAATCTGTAGTTATGCTCAGGGGATGAATTTGCTAAGGGCAAAGAG
CTCTGAGAAAGGTTGGAATTTGAATTTGGGAGAGATGGCTAGGATTTGGAAAGGTGGTTGTATTATCAGGGCAGTGTTTTTGGATCGTAT
TAAGAAGGCGTATCAGAGGAATCCTAATTTGGCTAACTTGATGGTTGACACGGAGTTCGCAAGGGAGATGGTGCAGAGGCAAGCTGCTTG
GAGGAGAGTGGTGGGACTTGCTGTTCAGAAGGGAATTAGTGTTCCTGGAATGTCTGCTAGTCTTCAGTATTTCGACACCTACAGGCGTTC
TAGGCTTCCCGCGAACCTTGTGCAGGCTCAGAGGGACTATTTCGGGGCACATACTTATGAGAGAGTTGACAAGCCAGGAGCATACCATAC
CGAGTGGGCAAAACTTGCTAGGAAAGCTCGAGTGTAATGCTGCTGCAGCTATTGCGGATTATGATCAAAATCTCTGGTATTAGTCGCGCT
TTAGTACTTTTTTCGTTTAGTTTTGCAGTTAATAATGTTGTATGCCTTTGAACATTATAGGGCCTTCGCTATCGAAATGACTTCTTCCAT
TGAAGTAAAAGAAGTTGCTTTTCCTACATTACATTTTGATGCATACAAATTACCTGCACTTTTATTTATATATATGGATTATTATAGCTC
CTCACTCTCCAAACGAATATTTTGTATAATTTGAAGATATCATGTTATAG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1

mRNA member sequences (17)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101660	6-phosphogluconate dehydrogenase NAD-binding - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098)	49
2	119322	6-phosphogluconate dehydrogenase C-terminal extension - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt oxidative branch (GO:0009051) - Molecular Function: NADP binding (GO:0050661) 6-phosphogluconate dehydrogenase C-terminal-like 6-phosphogluconate dehydrogenase C-terminal core - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt oxidative branch (GO:0009051) - Molecular Function: NADP binding (GO:0050661) 6-phosphogluconate dehydrogenase - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098) 6-phosphogluconate dehydrogenase C-terminal - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098) 6-phosphogluconate dehydrogenase NAD-binding - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098) 6-phosphogluconate dehydrogenase decarboxylating - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098)	17
5	129666	6-phosphogluconate dehydrogenase C-terminal extension - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt oxidative branch (GO:0009051) - Molecular Function: NADP binding (GO:0050661) 6-phosphogluconate dehydrogenase C-terminal-like 6-phosphogluconate dehydrogenase C-terminal core - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt oxidative branch (GO:0009051) - Molecular Function: NADP binding (GO:0050661) 6-phosphogluconate dehydrogenase - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098) 6-phosphogluconate dehydrogenase C-terminal - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098) 6-phosphogluconate dehydrogenase NAD-binding - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098) 6-phosphogluconate dehydrogenase decarboxylating - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098)	17

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U218212	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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