Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577041 in the current build, Tomato 200607 #2

Unigene SGN-U318900

Unigene Basic Information

Unigene ID:	SGN-U318900
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	318900
mRNA sequence:	Length: 1987 bp

>SGN-U318900 Tomato 200607 #1 (15 members)
GATCCAAAAATGAGAGCGCTATGTCTCAACGTTTCTCTATTCACAGCGACTCTTCCCAAAAATAACACTCCTCTTATCCACTCCTACTGT
AACTGCTTTTCCACTTCCTTTCCCGGCGATAATGGCCGTTTCGGGCAACGAGTCACCACTACTCGCCGGAGAAACAGCAAGTCGGAGATT
TTTCTCGGCGACGAAGAGGAAGTCCAAGCAGGAGAAAACGAGAAATTTTCCAGCATAGCTGAAGAAACATCTAGGGCTATGAGATTGAGG
AGGTCTAAAGGTGTTGTAGACACAGAGGAGGAAGAAGAAGAGGACGATTCGTCGATGTTGCTATCTCTGAGTGTGAAACCAGACCGAAAC
ATGGCTTTACTTGATGATTATGAAATGGAGGAGCTCGATTTTGTTCCTGAAAATCCTAATCATCGCAGTGGATATGTAGCTGTGCTTGGG
AAGCCGAATGTTGGGAAAAGTACACTTTCCAATCAAATGGTTGGGCAGAAACTGTCAATTGTTACTGATAAACCTCAAACTACTCGTCAT
CGAGTTCTTGGAATATGTTCTGGTCCAGATCATCAGATGATACTTTATGACACTCCCGGTGTCATAGAGAAGAAAATGCATAAGCTAGAT
ACAATGATGATGAAGAATGTCCGAAGTGCAGCTGTTAATGCAGACTGCGTGCTTGTTGTTGTGGACGCATGTAAGGTTCCTGCAAAGATA
GATGAAGTGTTGGAAGAGGGTGTTGGTACTTTATACTTTAGGTCTCCAACATTGTTAGTCTTGAATAAGAAGGACCTAATCAAGCCTGGT
GAAATTGCAAAGAGACTTGAGTGGTACGAGAAATTTACGGACGTTGATGAGGTCATACCTGTAAGTGCGAAGTATGGTCATGGAGTAGAA
GATGTCAAAGACTGGATATTATCTAAACTTCCTCTTGGGCCTGCTTATTATCCCAAGGACATTGCTAGTGAGCATCCTGAAAGATTTTTT
GTGGCTGAAATTGTCAGAGAGAAGATATTTCTGCAATACCGAAATGAAGTTCCTTATGCATGCCAGGTTAATGTAGTTAGTTACAAGACT
AGACCGAATGCGAAAGACTTCATTCAAGTCGAAGTTATAGTGGAGAGAAACACTCAAAAGATCATCCTTATTGGAAAGGAAGGGAAGGCT
TTAAAGCTTCTTGCCACAGCTGCAAGGCTTGACATAGAAGATTTCCTACAAAAGAAAGTTTTTCTGGAGGTTGAGGTGAAGGTGAAAGAG
AATTGGAGGCAAGATGAAGGTCTCCTGAAGGACTACGGCTACGGGGGCCATATTCAAGCTTTGTGATTTGGAAACTCTGTTTTGAACTCT
TAATGGATGGAATGTGAATGATGATCAGTAGCTCTTGATGCTCTCCATGATGAACTAGCTGTAATTTCTATAAATGTTTCCCAAAGTACA
GCAGGCTAATTAAGCAGACGGGATTTTGTGAAAGTTCTTGATGTCAGGATCAGGTACAAGAAATATCCTTGCGGAGAGATCATGATGTAA
ATGCACCAGATCTCATCTCAGCTGCCAATCTCATTTCTGATTAATGTAGTTGTCCCTTGAGGGATGCCGTTGAAGGGAGGAAGAACTTGA
CAGAAGATGCAGGTGGCTGCCTGCTCAGCAAGTAAACCTTACACGTTCGTTCTGTCTTTACTACTCAACTGTCTAACTAATATTGCAATG
TTAAGACATTCTGATGTACTAATTGCTGCTGTTAATTGGAAAAAGTAGAGAGACGTGTATTGCTTCAAATTCTGGCGGGAACTGATTCAC
ATCACTGCAAGACATGTTTTTGTGCACAAATTATTTTGTAAATTTTATTTGCAGTAGAGATTTTTGTAGGAAGTAGTCTTCAGCTGTCAC
TGGATCGGTACATTGTCTTTCACATTTCCAAAGTTTTATACTGGTGTGTGTATTTAATTATTGTATCTTTGACATTTTCAAAAAAAAAAA
AAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (15)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101549	GTP1/OBG - Molecular Function: GTP binding (GO:0005525) GTP-binding protein HSR1-related - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622)	77
2	123943	GTP1/OBG - Molecular Function: GTP binding (GO:0005525) GTP-binding protein Era - Molecular Function: RNA binding (GO:0003723) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) KH type 2 - Molecular Function: nucleic acid binding (GO:0003676) GTP-binding protein HSR1-related - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622)	4
5	134105	GTP1/OBG - Molecular Function: GTP binding (GO:0005525) GTP-binding protein Era - Molecular Function: RNA binding (GO:0003723) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622) Small GTP-binding protein domain - Molecular Function: GTP binding (GO:0005525) KH type 2 - Molecular Function: nucleic acid binding (GO:0003676) GTP-binding protein HSR1-related - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622)	4

Preceding Unigenes (2)

Unigene	Build
SGN-U221561	Lycopersicon Combined #3
SGN-U222330	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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