Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U569332 in the current build, Tomato 200607 #2

Unigene SGN-U319875

Unigene Basic Information

Unigene ID:	SGN-U319875
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	319875
mRNA sequence:	Length: 2161 bp

>SGN-U319875 Tomato 200607 #1 (12 members)
GAATACCAAGAAGCACAAAAAAGGTTCTTGATTATTTTTTTTTTATTAGACAGTAAAATAAAAGTACAATATTGCTAAACCTAAGGAGCA
AAGGAAAAACCCTAGAATAGAAGCTCACTTTTCTCCTCAAGATCGAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATGCAACC
TCAGATCATATTGCTTAAGGAAGGGACAGACACGTCTCAGGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGA
TGTGGTGCGTACCACCCTTGGTCCTAGGGGTATGGACAAGTTGATCCACGACGATAAAGGAAACACCACTATTTCAAATGATGGTGCCAC
TATAATGAAGCTTCTAGATATAATTCATCCTGCAGCAAAAATACTTGTTGACATCGCCAAGTCTCAAGACTCTGAGGTTGGTGATGGAAC
CACTACAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAG
TTATCGAACCGCTTCTAATATGGCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCT
GCTTGCAAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCT
TGCAATCGGAACTGATGATAGGCTGAACATGATCGGAATTAAGAAGGTCCCTGGAGGTACTATGCGGGATTCTTTCCTTGTAAATGGTGT
TGCCTTTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTT
GGAGCTAAAATCAGAAAAAGAAAATGCAGAGATAAGGCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCAT
TTATGACAAGTTGGATAAATGTGTAAAGAGTGGTGCCAAAGTTGTTTTGTCTAGACTCGCTATTGGTGATCTGGCCACACAGTATTTTGC
AGACCGAGATATATTCTGTGCTGGTCGTGTCTCTGAAGAGGATCTGCAGCGGGTAGCTGCTGCTGCTGGTGGAACAGTGCAGACAACTGT
GAACAATGTTATTGATGAGGTTCTTGGCTCTTGTGAGATTTTTGAGGAGAAGCAAGTTGGAAATGAGAGATTCAATATATTTAGTGGATG
TCCCTCTGGCAAGACCGCCACTATTGTCCTTCGTGGTGGAGCAGATCAGTTCATTGAGGAAGCTGAGAGAAGCTTGCATGATGCTATTAT
GATTGTTAGAAGAGCTGTGAAAAACTCTACGGTTGTTCCTGGAGGTGGTGCAATAGATATGGAAATAAGCCGTTTCTTGAGGCACCATGC
TCGAACAATTCAAGGGAAATCTCAGCTCTTCATAAACTCTTATGCAAAAGCTCTTGAGATTATCCCCCGTCAGCTATGTGACAATGCTGG
TTTTGATGCAACTGATGTGCTGAACAAGCTCAGACAAAAACACGCTCTTCCGTCTGGTGAGGGTGCACCTTATGGAGTTGACATTAATAC
TGGTGGCATAGCTGATTCATTTGCCAACTTTGTTTGGGAGCCAGCAGTCGTGAAGATAAATGCCATCAATGCAGCCACTGAAGCTGCATG
CCTCATTCTGAGTGTAGATGAGACAGTGAAGAATCCTAAGTCTGAGAGTGCACAAGGAGATGCTGCTGCAAGTGCCATGGGTGGTGGTAG
AGGGCGTGGACGTGGACGTGGAATGAGACGGCGATAGATTTCATAAGTTCTTTTGCAGATTTTGCTATGATTTTTATGTAGTGTTTGCTT
TTTTCCCCATGTTTGCTCCTCCCTTCTGTAGTTCTAGTTGTCTCCCTCGATCAAAATGTTCAAATTTGGACATCGATTCTCATATAGCAA
CCGAGAAACAATCAAAACAGAGCTGTGTTAAGTTCAGGCAACATCCAGTAAACTAAATTATTTTTGTTGCTGTCAGTTTTGCAATGTACG
AAGCCTGCCGCTGGATATATAATATTCTGTGTATTAAACTTCATCTTGTGTTGAAAAGTTCACAAATTTACGACATAAAAAAAAAAAAAA
A

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (12)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101419	Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	214
2	118577	GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	50
5	130313	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) Chaperonin TCP-1	11

Preceding Unigenes (3)

Unigene	Build
SGN-U222270	Lycopersicon Combined #3
SGN-U227413	Lycopersicon Combined #3
SGN-U242886	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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