Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U585447 in the current build, Tomato 200607 #2

Unigene SGN-U320525

Unigene Basic Information

Unigene ID:	SGN-U320525
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	320525
mRNA sequence:	Length: 1907 bp

>SGN-U320525 Tomato 200607 #1 (10 members)
TTGCATTCAGCAGACCCATTCGTTGGATTTTGGCCCTTCATGGAGGTGTAGTTCTTCCCTTCATGTATGCTGGAGTTGTAAGTGGAAATG
TATCTCATGGTCTACGCAATACTCCATCAGCTACAGTTAAGATATTGGATGCAGAAGCCTATGCAAATGTAATGCAGGATGCTGGGATTC
TTGCTGATGTCGAGCATCGCAAGAAAACAATTACAGAGAAATCAAATGATTTAGCAAAAAGTGTACATGGACATATTGTAATGAAGAGTG
ATTTGCTTGATGAGGTTGTGAATCTTGTTGAGGCACCACTCCCTGTACTTGGCAAATTCAATGAGTCCTTCTTAGAGCTTCCAAAGGAGC
TACTTATAATGGTGATGCAGAAGCATCAGAAATACTTCGCCATGACTGATGAGAATGGGTTACTGTTGCCATACTTTGTCACAGTTGCAA
ATGGATCAATTGATAACAAGGTAGTTAGAAAAGGAAATGAAGCTGTGCTAAGAGCTCGATTTGAAGATGCAAAATTTTTCTATGCAATGG
ACACAAATAGAAAATTTTCTGAATTTCGTACGCAACTGAAAGGGATTCTTTTCCATGAGAAGCTTGGGACTATGTTAGATAAGATGACAC
GAGTTCAGAATTTGGCTAGTGAAGTTGGATTGTCTCTTGGAATAAGTGAAGACAAACTCGAAGTCATCCAAGATGCAGCCTCATTAGCCA
TGGCGGATCTTGCAACTGCAGTTGTTACAGAGTTCACTTCTCTTTCAGGGACAATGGCACGCCACTATGCACTTAGAGATGGCTATTCAA
CGGAGATTGCAGAGGCTTTGTTTGAGATCTTACTTCCACGATTTTCTGGAGATATGCTCCCAAAGACCGAAGTTGGGTCTGTTTTGGCTA
TTACTGATAGGCTTGATAGCATTGTTGGCTTATTTGCTGCTGGCTGTCAGCCAAGCTCAAGTAATGATCCATTTGGCCTGCGACGGATCT
CCTACGGTCTTGTGCAACTCTTGGTTGAAATTGACAGAAATGTGGACTTACGACAGGCTTTAGAACTTGCTGCTGCAGTGCAACCCATTG
AAGTTGATGTCAGTACAATCAATGATGTACATCAATTTGTAACACGCAGACTAGAACAATTTCTGATGGACAAAGGTATAAGCCCAGAAG
TCGTTAGGTCTGTTCTTTCCGAGCGTGCAAGACGACCTGGTTTGGCGACTAAGTCAGTGTACAAAATGGAGTCCTTGTCCAAAGGGGAGC
TTTTGCCTAAGGTTGTTGAAGCATATTCACGTCCAACAAGAATTGTTCGCGGGAAGGATGCCAATGTTGATGTGGAGGTGGATGATCAAG
CTTTTGAAACAAATGAAGAGAAAGCTTTGTGGAACACTTTCTTGTCACTAAAAAGTAAAATACATCCAGACATGGAAGTCGATGATTTTG
TTGAAGCATCATCAGTACTTGTAGAACCGCTGGAGGATTTTTTCAACGAGGTCTTTGTAATGGTGGATGACGAACGGGTCAGAACAAATC
GGCTTGCACTGCTGAAGAAAATAGCAGACTTGCCAAGGGGAATAGTAGATCTTTCAGTTTTACCGGGATTTTGAAGTATGTACCAGTGTC
CGCTTAGTTTGTGCCATACTATCATCTGAGGCATCAAAGAAGAACAGCTATTGCCCATAAGCGGAGGAGAAAACAGTAAACAGACTAATG
TTTTTTCCGCGGAGGCAGCTACAACCACAACAGAGCGAACTAGAGGAGAAACTGTTACATAAATCTGGTAACGATGTCATAATTTTGACT
GTTGTACAAGTATGTAACAAGTGAATGAATAATAAAATGAACTATCGCTTGTATGTTCACATTGTCTGAGGAATATATATCATTTTGTTT
TAAGTTAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1

mRNA member sequences (10)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	103585	Glycyl-tRNA synthetase beta subunit - Molecular Function: glycine-tRNA ligase activity (GO:0004820) - Molecular Function: ATP binding (GO:0005524) - Biological Process: glycyl-tRNA aminoacylation (GO:0006426) t-snare Heterodimeric glycyl-transfer RNA synthetase - Molecular Function: glycine-tRNA ligase activity (GO:0004820) - Molecular Function: ATP binding (GO:0005524) - Biological Process: glycyl-tRNA aminoacylation (GO:0006426) Glycyl-tRNA synthetase alpha subunit - Molecular Function: glycine-tRNA ligase activity (GO:0004820) - Molecular Function: ATP binding (GO:0005524) - Biological Process: glycyl-tRNA aminoacylation (GO:0006426) Aminoacyl-tRNA synthetase class 1a anticodon-binding	6
2	122488	Glycyl-tRNA synthetase beta subunit - Molecular Function: glycine-tRNA ligase activity (GO:0004820) - Molecular Function: ATP binding (GO:0005524) - Biological Process: glycyl-tRNA aminoacylation (GO:0006426) Aminoacyl-tRNA synthetase class 1a anticodon-binding Heterodimeric glycyl-transfer RNA synthetase - Molecular Function: glycine-tRNA ligase activity (GO:0004820) - Molecular Function: ATP binding (GO:0005524) - Biological Process: glycyl-tRNA aminoacylation (GO:0006426) t-snare Glycyl-tRNA synthetase alpha subunit - Molecular Function: glycine-tRNA ligase activity (GO:0004820) - Molecular Function: ATP binding (GO:0005524) - Biological Process: glycyl-tRNA aminoacylation (GO:0006426)	5
5	132682	Glycyl-tRNA synthetase beta subunit - Molecular Function: glycine-tRNA ligase activity (GO:0004820) - Molecular Function: ATP binding (GO:0005524) - Biological Process: glycyl-tRNA aminoacylation (GO:0006426) Aminoacyl-tRNA synthetase class 1a anticodon-binding Heterodimeric glycyl-transfer RNA synthetase - Molecular Function: glycine-tRNA ligase activity (GO:0004820) - Molecular Function: ATP binding (GO:0005524) - Biological Process: glycyl-tRNA aminoacylation (GO:0006426) t-snare Glycyl-tRNA synthetase alpha subunit - Molecular Function: glycine-tRNA ligase activity (GO:0004820) - Molecular Function: ATP binding (GO:0005524) - Biological Process: glycyl-tRNA aminoacylation (GO:0006426)	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U218173	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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