Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U572630 in the current build, Tomato 200607 #2

Unigene SGN-U322991

Unigene Basic Information

Unigene ID:	SGN-U322991
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	322991
mRNA sequence:	Length: 1496 bp

>SGN-U322991 Tomato 200607 #1 (7 members)
TAAATATGCACAAAATTTGTTTATTTTTAGCCAATAAGAAAGAGATCTCGTTGAGTAGTTGAAAAAAAAACTTTAATTAGTAGTTGAGGA
ATAATAAGTTTCCTTTTTTTTATAGGGTTTTTATTTAGTTATCATCATCATCTTGATTTAGGGTTTTTTTTCCCCTTATTTAATGGAGAA
TAATAATTATAATAATCATGTGTCTGGAGAAAATTCAGGAGGTCAAAGAGGTCATTTCTTTTATGGAGGAAATCAAGTTCTTGGTGGTGC
TGCCCCTATTTATGGTAGAGGTGGAGATTGTTATGATCCGATGATAGTAAAAACAGAAGGTGGAGGAAGTACTTCTCATCATAACCATAC
ATTTCATTATCCATCGATTATTCGTAATCATCATCATGACAGTACGGAAACTTCTGGTGGTGGTGCTGGTGCTGGTGAAGTAATCGAAGC
TTTAAAAGCCAAAATTATAGCTCATCCTCAATGTTCTAACCTTTTGGATGCTTACATGGACTGTCAAAAGGTGGGTGCACCGCCGGAAGT
GGCGGCGAGGCTGTCGGCGGTACGGCAAGAGTTTGAGGCGAGGCAACGAGCTTCGTTGACCGACAGAGATGTTTCCAAGGACCCAGAACT
TGATCAGTTCATGGAAGCATATTATGACATGCTAGTCAAGTATAGAGAAGAATTAACAAGGCCTCTTCAAGAGGCAATGGAGTTCATGCA
AAAGATTGAAGCTCAGCTTAATATGCTTGGTAATGCTCCCGTTCGGATCTTCAATTCTGAGGACAAGTGTGAGGGTGTTGGATCATCAGA
AGAGGATCAAGACAACAGTGGTGGAGAAACTGAACTTCCTGAAATAGATCCAAGAGCAGAAGATAGAGAACTTAAGAATCACTTGTTGAG
AAAATATAGTGGCTATTTAAGTAGCCTCAAACAAGAACTTTCAAAGAAGAAGAAAAAGGGGAAATTGCCCAAAGATGCTAGGCAGAAATT
GATCACTTGGTGGGAGTTGCACTACAAGTGGCCATACCCTTCGGAGTCGGAGAAGGTTGCATTGGCAGAATCAACAGGATTGGATCAGAA
ACAAATAAATAACTGGTTCATTAACCAAAGGAAAAGACACTGGAAGCCTTCAGAAGACATGCAATTTATGGTGATGGATGGTCTTCATCC
ACAAAGTGCTGCTGCTCTTTATATGGAAGGTCACTACATGGGTGAAGGCCCTTTTCGTTTGGGTCAGTAATATTTATGAATTTTAATAAA
TTAAACTTTGCATGCTACATTTTCTTAATTGGGAAAAAAGAAACATTTAATTTCCTTGTAAGGTGAGTATGAATAGTATGGATTTTTAAT
TAGTTGTAGTATGTATGTTTCTAGCAAGCCTTATAGGCCTAAGCACAAGGATATTTTATTGCTTGTTCAATTGTATATGGTGAGAATCCT
TTTGTATTTAATATTGTAATGTTATTATTAGTGTACCAAAATCTAGTGTTAACTTA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
tkn1	Knotted 1

Genomic locations (0)

None

Library representation (4)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cTOS	suspension cultures	8026	3
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (7)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101481	Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like	108
2	118653	KNOX1 - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) KNOX2 - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like ELK - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634)	39
5	129803	KNOX1 - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeobox - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) KNOX2 - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) Homeodomain-related - Molecular Function: DNA binding (GO:0003677) - Biological Process: regulation of transcription (GO:0045449) Homeodomain-like ELK - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634)	15

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U221625	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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