Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U581076 and SGN-U592473 in the current build, Tomato 200607 #2

Unigene SGN-U314418

Unigene Basic Information

Unigene ID:	SGN-U314418
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314418
mRNA sequence:	Length: 898 bp

>SGN-U314418 Tomato 200607 #1 (299 members)
AGGGCGATTGGCGGCCAATCGGCCGAATTGGTATCAAACACCATACACTTTCTAAATTATCGATAGATTTATTGTTTCAGATGGAGGAGG
AGAAACACCACCACCACCACCTGTTCCACCACAAGGACAAGGCGGAGGAGGGCCCCGTCGACTACGAAAAAGAAATCAAACACCATAAAC
ATCTCGAGCAAATCGGTAAACTTGGCACTGTTGCTGCCGGTGCCTACGCCTTGCATGAGAAACATGAGGCAAAGAAAGATCCAGAACATG
CACACAAACACAAGATAGAGGAAGAGATAGCAGCAGCTGCTGCAGTTGGGGCAGGTGGATTTGCATTCCATGAGCATCATGAGAAAAAAG
ATGCCAAGAAAGAAGAAAAAAAAGCTGAGGGGGGACACCACCATCTCTTCTAAATTGTTATTTTAGTTACATTTTTAATATTCGTGGAAT
TTCCATATTTGGTATAAGTGTTGTGTCATCTTATCATATATCGTGCATAATAACAATAAATTTAGTGTGATATTATAAATGGATCGAGTT
AAAAAAAAAGAGCAAAAGTCAAAATATATTTTACCAATCTCGTGTGATGTAAAGAAGGATGTATTGTGATTTCCAAAATGATCATGTGTG
TTTTGGACTTTCCTCGCAATCTTCTGTTGAATTACCTTGTAAAATGTTGCTTTTTTAAGTGGTGTAATAAATAATGAGTTTTCTAGTGAA
TGGATTTGTTTGATTTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCTGGG
GGGGGGGGCGGGGAACCAAATCCCCCCAAAGGGGCCCCTTTTATTTTTTTTAAGGGGCCCCAAAAAATGGGGGGGAAAAAGGGGGAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Asr_2	Abscicic acid stress ripening 2	Putative DNA binding and chaperon like activity

Genomic locations (0)

None

Library representation (23)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum peruvianum	vSperumRNA		42	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	9
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	126
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	78
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEE	seeds and maturing carpels 5 days post-anthesis to fruit over-ripe stage	547	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	9
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	10
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	25
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	9
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	7
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	5
undefined	vShabmRNA		29	1

mRNA member sequences (299)

Alignment image suppressed for unigene with 299 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 2 | blast: 1 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101472	Prenylated rab acceptor PRA1	112
2	118771		31
5	129247		29

Preceding Unigenes (1)

Unigene	Build
SGN-U213100	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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