Sol Genomics Network

Unigene SGN-U578847

Unigene Basic Information

Unigene ID:	SGN-U578847
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1977 bp

>SGN-U578847 Tomato 200607 #2 (67 members)
TCGACCTACTCCCCAAATCATTCTTCTTCTCTAGCGCAACTTCTCTCGGAAAAAGGCATCTCCTCCTCCTCTCGTTCTCTCGATAATCTC
CTTACGCACTAGTTCTTCTTCTCAAGATGCAGATATTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTTGAGAGTTCTGACA
CCATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAGCAGAGACTGATCTTTGCTGGGAAACAGCTTGAAG
ATGGCCGAACACTTGCTGATTACAACATCCAAAAAGAGTCTACCCTTCATCTTGTCCTCCGTCTACGTGGTGGGATGCAAATCTTTGTTA
AAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTCAGACACCATCGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTA
TTCCCCCAGACCAGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACAACATCCAAAAGGAGTCCA
CCCTTCACCTTGTCCTTCGCCTTCGTGGTGGTATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTT
CCGATACTATTGACAATGTGAAGGCCAAAATTCAGGATAAGGAAGGGATTCCTCCAGACCAGCAGAGACTGATCTTTGCCGGCAAGCAAC
TTGAGGATGGAAGGACCCTGGCTGACTACAATATTCAGAAAGAGTCTACCTTACATCTTGTTCTTCGACTGAGGGGTGGCATGCAAATAT
TTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCAGATACTATCGACAATGTTAAAGCAAAGATACAAGACAAGG
AGGGTATTCCTCCAGACCAGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACGTTGGCAGATTACAACATTCAGAAAG
AATCAACCCTGCACCTTGTTCTTCGCCTTAGAGGTGGCATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTG
AGAGTTCAGATACCATTGACAATGTGAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAACAGCGTTTGATCTTTGCTGGTA
AACAACTTGAGGACGGGAGGACTCTTGCAGACTACAACATCCAGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGGGATGC
AGATCTTTGTGAAGACTTTGACTGGGAAGACAATCACATTGGAGGTTGAGAGTTCAGATACCATTGACAATGTGAAAGCAAAGATTCAAG
ACAAGGAGGGTATTCCCCCAGACCAACAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGATGGGAGGACTCTTGCAGACTACAACATCC
AGAAGGAGTCAACTCTCCATCTGGTGTTGCGTTTGAGAGGAGGGATGCAGATCTTTGTGAAGACTCTTACTGGGAAGACAATCACATTGG
AGGTGGAGAGCTCTGATACTATTGACAATGTGAAAGCAAAGATACAGGACAAGGAAGGGATCCCACCAGATCAACAGAGGCTCATCTTTG
CTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCAGACTATAACATCCAGAAAGAGTCTACTCTTCATCTTGTCCTGAGGCTCCGTGGCG
GTGACTTGTGAATGTCCTGTGTGCTGCTGATTTCATGATGGCTGTGTGCTTTGTTGTTTTATTTCATGACTTTTAGTGTTCTTCGTTATA
GTACTATCTTTCTTTTAAGAGACCTTGTAATGTGTTATGTTCTGTTGTTTTTTGCTGCAACCTTAATAAATAAATATTAGCCGATAAAAA
AAAAAAAAAAAAAACTCGGGGGGGGGCCCGGAACCCAATTCCCCCTATAGGGAGTCTAATTACATTTCACGGGCCGTCTTTTTAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
UBQ1	POLYUBIQUITIN 1

Genomic locations (0)

None

Library representation (28)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	4
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	4
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	6
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	Le2TR	roots 1-,2-,3-, and 4- month-old	1179	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	3
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	2
Solanum lycopersicum	Sl_FruitQTL	late maturation (breaker and red ripe)	663	6
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (67)

Alignment image suppressed for unigene with 67 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 3 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U314063	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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