Sol Genomics Network

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Unigene SGN-U579086

Unigene Basic Information

Unigene ID:	SGN-U579086
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1961 bp

>SGN-U579086 Tomato 200607 #2 (92 members)
GGGGAACACAAATCTGTCATCAGTGTGCAATCTCGTGTCAACCTAAGTAGCAGAAAAATGGCTCCAATCGCCGTTGGTGACGTCATCCCC
GATGGTACCGTATCTTACTTCGACGAGCAAGATCAGATGCAGACCGTCTCAGTATACTCACTTGCTAAGGGCAAGAAGGTCATCATCTTC
GCCGTTCCCGGAGCTTTCACTCCCACTTGCAGCATGAAGCATGTGCCTGGCTTTATTGAAAAGGCTGCTGAGTTGAAGTCAAAGGGTGTC
GATGAAATCCTCTGCATCAGTGTCAATGACCCCTTTGTGATGAAGGCCTGGGCAAAAACTTACCCTGAGAACAAACATGTAAAATTTCTT
GCTGATGGAGCTGGAAAATACACCCATGCCCTTGGGCTGGAGCTTGATCTGTCGGATAAGGGGCTTGGTGTTCGATCACGAAGGTATGCT
CTTTTGGTTGATGACCTTGAGGTGAAAGTAGCTAACATTGAATCTGGAGGGGAGTTCACGGTCTCCGGTGCTGATGAAATCGTCAATGCT
CTTTAAGCTTATCACTACTGCCTCCCAAGTGTTCTGGCTCTACAATGAGCTTCTAGAATCTATGCCAATAATGTTTTTGATATATCTGTA
GTCGCTAATATCAAACTTTGTATGAAGAATGCTTTGTGGAAATAAGAATTTCTTGCTTTACTAATGTGTTGGAGGCAAAGAAACTGGCAA
TATGTAAAATTACTCTGGGGTGAGGTGTGGACAGTAGCGTTGTAACTAAAAAAAAAAATACTGAGATCTCGCAAATTATTCACTCAATTT
GCTCCCCGATCTCCCATACGACTATGGCGCCCTGGCAGCGGGCAATAGCGGTGATATAATGCATCTCTCTACTAGAAGCATTTAGAAATT
AAAAATAATCGAAAATGGCTCTTCGGACTTTAGTGAGCAGACGGACCTTAGCGGCAGGGCTAGGGTTCCGCCAACAACTTCGTGGCGTTC
AAACCTTTTCGCTCCCCGATCTCCCATACGACTATGGCGCCCTGGAGCCGGCAATTAGCGGTGATATAATGCAGCTCCACCACCAGAAGC
ATCATCAGACTTACATCACTAATTACAATAAGGCCCTTGAACAGCTCCATGATGCCATCTCCAAAGGAGATGCTCCTGCCGTCGCCAAAT
TGCACAGTGCCCTCAAATTTAACGGCGGAGGTCATATTAATCACTCAATTTTCTGGAATAACCTTGCCCCTGTCAGCGAAGGTGGTGGGG
AGCCTCCAAAGGGTTCTCTTGGCTGGGCTATTGACACTAACTTTGGTTCACTGGAAGCTTTAGTAAAAAAGATGAACGCAGAAGGTGCTG
CTTTACAGGGCTCTGGCTGGGTGTGGCTTGGTGTGGACAAAGAGCTTAAGCGCCTGGTGGTTGAAACCACTGCAAATCAGGACCCTTTGG
TTTCTAAAGGAGCAAATTTGGTACCTCTTCTGGGTATAGACGTTTGGGAACACGCATACTACTTGCAGTACAAAAATGTAAGACCAGATT
ACCTGAAGAATATATGGAAAGTTATCAACTGGAAATATGCCAATGATGTTTACGAAAATGAGTGCCCCTGAACAGGGACCATGTTTGTAA
AAGCTTATGATGTGAAATAATAGCTGAGTGACACGAGCAACCTATTTTTCTCAAGTTTTAGTTGCTGGTTGATGTAATCGATGTATGGAT
CCCAAATAAAACTACTTTTTATCTCGTGAGTTGTGACTCAGTTTCTTGGACATCCAGTTCATGCAAATATAGTAACAGGTTGAAGTTCTG
GGGGGGGGGCGGACTCCACAACTCCCGTATTGAAGATAAAATAAAATCAGCAACGACTTCTCAACTTCTAGGTAGCCATACCTGTACACC
AAGGGATTTTGCATTATATGTTCCATTTTGGCAATGTTGACTTGTTTTTTGAATCAACTGTACTTTATGGC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
tpx1	thioredoxin peroxidase 1	thioredoxin peroxidase

Genomic locations (0)

None

Library representation (32)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	5
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	3
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	Le2TR	roots 1-,2-,3-, and 4- month-old	1179	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	4
Solanum lycopersicum	LeMiToLf01	leaf	30679	2
Solanum lycopersicum	LePS	root 5 weeks old plants	823	1
Solanum lycopersicum	Sl_RootN	Roots 5 weeks	165	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	11
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	10
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	4
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	7
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	6
Solanum lycopersicum	cTSD	seed	1504	1
Solanum lycopersicum	vSlycmRNA		8362	3
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (92)

Alignment image suppressed for unigene with 92 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (13)

Annotations (manual: 2 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U313057	Tomato 200607 #1
SGN-U316017	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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