Sol Genomics Network

Unigene SGN-U271368

Unigene Basic Information

Unigene ID:	SGN-U271368
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271368
mRNA sequence:	Length: 1243 bp

>SGN-U271368 Solanum tuberosum #4 (14 members)
CCTCCATTTTTTCTCTGTAAATTCTCCGGCCTCTCTCCTTTTCCGGCAATGGAACCTCAAACTCAGGCGAAGAAATCAAACCTCGTACTC
ATCCTAGATTACGGTTCTCAATATACCCATCTCATCACTCGCCGAATTCGAAGTTTATCTGTTTTCTCACTCTGTATCAATGGCACTTCT
TCGTTAGACTCCATAACCGAGCTCAACCCACGTGTTATTATCCTCTCAGGTGGACCTCACAGTGTCCACGCTGACGGTGCGCCGTGTTTC
CCATCTGGGTTCATTGAGTATGTGGAGTCGCAAGGGATTCATGTGTTGGGGATTTGTTATGGGTTGCAGCTTCTTGTGCAGAACCTTGGT
GGGGTTGTGAAGGTTGGGGAGAAGCATGAGTATGGGAGAATGGAAATTGAGGTTCAGAAGAATTATGGGTTGTTTGGGAATAAGCAAATT
GGGGATAAACAGGTTGTTTGGATGAGCCATGGTGATGAGGCTGTGAAGTTGCCGGAAGGGTTTGAGGTTGTGGCGAGGAGTAATCAGGGA
GCTGTTGCTGCTATTGAGAATAGGGAAAAGAAGTTTTATGGGTTGCAGTATCATCCTGAGGTGACACACTCGGTTGAAGGGATGGAAACA
TTACGACACTTCCTATTTGATATTTGCGGGGTTACAGCAGGCTGGAACATGGAAGATGTTCTGGAGGAAGAAATAAAAGTAATCAAAGCC
TTGGTAGGACCTGAAGATCATGTAATTTGTGCTTTATCTGGTGGTGTTGATTCCACAGTTGCAGCTACAGTGGTACACAAGGCTATTGGA
GACAGGCTTCACTGTGTTTTTGTTGATAATGGTTTATTAAGGTACAAGGAGAGAGAAAGAGTGATGGCAACCTTTGAGAGTGACCTTCAT
TTGCCCGTTACCTGCGTTGATGCTACAGAAGAATTTCTCAGCAAACTAAAAGGTGTGACAGAGCCTGAAATGAAAAGGAAAATTATTGGG
AAGGAGTTCATCAACATATTTGATATTTTCGCCCATGATTTGGAGAAAAAAGTGGGAAAGAAACCTGCTTACCTAGTCCAAGGAACCTTG
TATCCCGATGTAATAGAGTCTTGTCCTCCACCTGGAAGTGGAAGAACACATTCTCATACAATCAAGAGCCATCATAATGTTGGAGGGCTC
CCAAAGGACATGAAGCTGAAGCTCATCGAGCCACTGAAACTTCTGTTCAGGATGAGGTTCGTGCAATGGGGAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	4
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	3

mRNA member sequences (14)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 6 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	887	GMP_synth_N GATase_1 Anth_synthII TrpG_papA	21
2	25888	GMP_synth_N GATase_1 Anth_synthII TrpG_papA GMP_synth_C	6
5	59857	GMP_synth_N GATase_1 Anth_synthII TrpG_papA GMP_synth_C	6
1.1	101766	Glutamine amidotransferase superfamily - Molecular Function: catalytic activity (GO:0003824) - Biological Process: glutamine metabolism (GO:0006541) Glutamine amidotransferase class-I - Molecular Function: catalytic activity (GO:0003824) Anthranilate synthase component II/delta crystallin - Molecular Function: catalytic activity (GO:0003824) - Biological Process: biosynthesis (GO:0009058)	39
2	123150	Glutamine amidotransferase superfamily - Molecular Function: catalytic activity (GO:0003824) - Biological Process: glutamine metabolism (GO:0006541) tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase - Molecular Function: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity (GO:0004808) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA processing (GO:0008033) GMP synthase N-terminal - Molecular Function: GMP synthase (glutamine-hydrolyzing) activity (GO:0003922) - Molecular Function: ATP binding (GO:0005524) - Biological Process: GMP biosynthesis (GO:0006177) Glutamine amidotransferase class-I - Molecular Function: catalytic activity (GO:0003824) GMP synthase C-terminal - Molecular Function: GMP synthase (glutamine-hydrolyzing) activity (GO:0003922) - Molecular Function: ATP binding (GO:0005524) - Biological Process: purine nucleotide biosynthesis (GO:0006164) - Biological Process: GMP biosynthesis (GO:0006177) Anthranilate synthase component II/delta crystallin - Molecular Function: catalytic activity (GO:0003824) - Biological Process: biosynthesis (GO:0009058)	4
5	133339	Glutamine amidotransferase superfamily - Molecular Function: catalytic activity (GO:0003824) - Biological Process: glutamine metabolism (GO:0006541) tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase - Molecular Function: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity (GO:0004808) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA processing (GO:0008033) GMP synthase N-terminal - Molecular Function: GMP synthase (glutamine-hydrolyzing) activity (GO:0003922) - Molecular Function: ATP binding (GO:0005524) - Biological Process: GMP biosynthesis (GO:0006177) Glutamine amidotransferase class-I - Molecular Function: catalytic activity (GO:0003824) GMP synthase C-terminal - Molecular Function: GMP synthase (glutamine-hydrolyzing) activity (GO:0003922) - Molecular Function: ATP binding (GO:0005524) - Biological Process: purine nucleotide biosynthesis (GO:0006164) - Biological Process: GMP biosynthesis (GO:0006177) Anthranilate synthase component II/delta crystallin - Molecular Function: catalytic activity (GO:0003824) - Biological Process: biosynthesis (GO:0009058)	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U245278	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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