Sol Genomics Network

Unigene SGN-U272973

Unigene Basic Information

Unigene ID:	SGN-U272973
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272973
mRNA sequence:	Length: 1423 bp

>SGN-U272973 Solanum tuberosum #4 (9 members)
CTGCACCAGCTCCAATCTCCGACAGAACCAAACGTCATCGGAAAACTCTTGACGATCTCCGCTCCACTGCCGCCGTTGTTCCTCTCTCCG
GTGAGTAATCTCAATATGACTATTTCCGCAACATTTTCTTCCCATGGAAAAATACTCATGTCACCTCTTAGAAAGAGTGAATGGGCAAAT
CAACCTGTGCTCTGTAAATCTGTTGAATTGTTTAAAAATGGACGAAATCAATACCGTCTGTCAACAAATAGCAACAAATTCCAATGCCGA
GCATTGGAGATCGAAAATAAATCTTCAACTAAGTTTCACCTTGATGATGTAATTGAATCTCAACAATTTGATAGAGAAACTCTTAGTGCG
ATATTTGAAGTAGCACGGGAGATGGAGAAAATCGAGAAGAATTCGATTGGAGGAAGAAGCGAGATTCTTAAGGGTTATCTTATGGCTACT
CTGTTTTATGAACCTTCAACTAGAACTAGGCTTTCATTTGAATCTGCTATGAAGCGTTTAGGAGGAGAAGTATTAACAACCGAAAATGCT
CGTGAATTTTCATCTGCAGCAAAGGGGGAAACACTAGAAGATACAATTAGAACTGTTGAAGGTTACTCTGATATCATTGTTATGAGGCAT
TTCGAAAGTGGTGCTGCTAGAAGAGCGGCGTCAACTGCATCTATTCCGATTATAAATGCAGGAGATGGTCCGGGACAACACCCGACTCAG
GCACTTCTAGATGTGTATACAATTGAACGAGAAATAGGGAAACTCGATGGTATAAACGTTGCTCTTGTTGGTGATCTAGCATACGGGAGG
ACAGTTCGTTCACTTGCTCATTTGCTTGCGATGTATGAAGATGTGAAAATTTACTTTGTATCCCCTGATGTTGTTAAAATGAAGGATGAC
ATAAAGGATTACTTGACATCAATGGGGGTTCAATGGGAAGAAAATGCTGATTTGATCGAGGTGGCTTCTAAATGTGACGTGGTGTATCAA
ACTCGTATTCAAAGAGAGAGATTTGGAGAGAGGGTTGATTTGTATGAAGAAGCTCGAGGGAAGTATATCGTTGATATGAGTGTCGTAAAT
GCTATGCAGAAACATGCTGTAGTGATGCATCCTTTGCCAAGACTTGATGAGATTACTGTTGATGTTGATGGTGATCCGAGGGCTGCTTAT
TTCAGACAAGCTAAGAATGGTCTTTACATTCGGATGGCGCTTTTGAAGCTTCTACTCCTTGGTTGGTGAAAGATGCAAACTTTTTATATT
GCGAAATCGTTCTTGTTGTCTGGATTCTGCTGTTGTTGAATTCAAGAGTTTTGTTAACTTGTTTTAGCATAAAAGAAAATTGAATCTCTT
TCTTTGTTCACAAAATAGTACATTCTATATATGCATTTTAAAGACTTTGAAAGAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
pyrb	aspartate carbamoyltransferase	aspartate carbamoyltransferase

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (9)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 7 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	955	Asp/Orn_COtranf Orn_carbtransf OTCace_P OTCace_O Asp_carbmltransf	20
2	26372	Asp/Orn_COtranf Orn_carbtransf OTCace_P OTCace_O Asp_carbmltransf	5
5	60370	Asp/Orn_COtranf Orn_carbtransf OTCace_P OTCace_O Asp_carbmltransf	5
1.1	101375	Chaperonin Cpn10 - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) GroES-like	508
2	122458	Aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain - Biological Process: amino acid metabolism (GO:0006520) - Molecular Function: carboxyl- and carbamoyltransferase activity (GO:0016743) Aspartate/ornithine carbamoyltransferase - Biological Process: amino acid metabolism (GO:0006520) - Molecular Function: amino acid binding (GO:0016597) - Molecular Function: carboxyl- and carbamoyltransferase activity (GO:0016743) Aspartate/ornithine carbamoyltransferase Asp/Orn-binding region - Biological Process: amino acid metabolism (GO:0006520) - Molecular Function: amino acid binding (GO:0016597) - Molecular Function: carboxyl- and carbamoyltransferase activity (GO:0016743) Aspartate carbamoyltransferase - Molecular Function: aspartate carbamoyltransferase activity (GO:0004070) - Biological Process: 'de novo' pyrimidine base biosynthesis (GO:0006207)	5
5	132652	Aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain - Biological Process: amino acid metabolism (GO:0006520) - Molecular Function: carboxyl- and carbamoyltransferase activity (GO:0016743) Aspartate/ornithine carbamoyltransferase - Biological Process: amino acid metabolism (GO:0006520) - Molecular Function: amino acid binding (GO:0016597) - Molecular Function: carboxyl- and carbamoyltransferase activity (GO:0016743) Aspartate/ornithine carbamoyltransferase Asp/Orn-binding region - Biological Process: amino acid metabolism (GO:0006520) - Molecular Function: amino acid binding (GO:0016597) - Molecular Function: carboxyl- and carbamoyltransferase activity (GO:0016743) Aspartate carbamoyltransferase - Molecular Function: aspartate carbamoyltransferase activity (GO:0004070) - Biological Process: 'de novo' pyrimidine base biosynthesis (GO:0006207)	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U251541	Solanum tuberosum #3
SGN-U253710	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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