Sol Genomics Network

Unigene SGN-U579445

Unigene Basic Information

Unigene ID:	SGN-U579445
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1213 bp

>SGN-U579445 Tomato 200607 #2 (169 members)
GGGGATCCAACAAACTTTGAAATCTTAACAGTTAAACATGGCTTCTTCTTCTTCTAAATTAGTACTTGTAATGTGTTTTATGATTAGTGC
TTTTGGCATTGCAATTGGGGCCAAGTTTGATCAAGAATTCGACATTACATGGGGTGATGGCAGAGCAAAAATACTTAACAATGGCGACCT
CCTTACTCTCTCACTTGACAAAATCTCAGGCTCTGGTTTTCAATCCAAGAATGAATATCTGTTTGGTAAAATTGACATGCAGCTCAAACT
TGTCCCAGGAAATTCTGCTGGCACTGTCACTGCTTACTATTTGTCATCACAAGGACCAACACATGATGAGATAGATTTTGAATTCTTGGG
AAATTTAAGTGGTGATCCTTATACTCTCCATACTAATGTATTTAGTCAAGGCAAAGGAAACAGAGAACAACAATTTCATCTTTGGTTTGA
CCCTACTGCTGATTTCCACACGTATTCCATCACTTGGAATCCACAACGCATCATATTTTATGTGGACGGAACGCCAATTAGAGAATACAA
GAATAGTGAATCGATTGGAGTTTCATATCCAAAGAACCAACCCATGAGGATATATTCGAGTCTTTGGAATGCTGATGATTGGGCTACAAG
AGGAGGCCTTGTTAAGACTGATTGGAGCCAAGCACCCTTTAGTGCTTCTTACAGAAACTTCAGTGCTAATGCTTGTATTCCCACTTCTTC
ATCTTCTTGCAGTTCCATTTCTGCAACTTCAACAAGCAATTCATGGTTGAATGAAGAGTTAGATAACACAAGCCAAGAGAGGCTCAAATG
GGTGCAGAAGAATTACATGGTTTATGATTACTGCACTGATTCAAAGCGATTTCCACAGGGATTTCCAGCAGATTGTGTTCAGAATATCTG
AGCATTAATAATGAAAAAATAGTGTATTACTTTAAAAACTATTGTATTGATTCTTTTATTGTTTTGTACCCATCAGAAGAAGATGCAATA
ATTATTGAGGATTAGAAACATCTTAGTTTTGTACTAAGTTATATAAACAATGAAATAGATACTTTTTTTTCTTCTAAAAAAAAATAGTGG
GCTAGTTTTATCCAAAAGTGAACAGCCCAAAGCCTAAAAAATAAGATGGAAAACAAAAAGAAATCTAGATTTATTCTCTGTATCTTTTCT
TTTGCATTTACAAAAGTATATATCAGGTATTCTTGGTTCTTCC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
xth3	xyloglucan endotransglucosylase-hydrolase 3

Genomic locations (0)

None

Library representation (22)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	Le2TR	roots 1-,2-,3-, and 4- month-old	1179	11
Solanum lycopersicum	LeMiToFr02	fruit	18697	4
Solanum lycopersicum	LePS	root 5 weeks old plants	823	1
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	8
Solanum lycopersicum	Sl_LeafCherry01	epidermis	226	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	15
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	40
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	55
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	10
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	4
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	vSlycmRNA		8362	3

mRNA member sequences (169)

Alignment image suppressed for unigene with 169 aligned sequences.
[Show Image]

Markers Information (1)

Expression Data (13)

Annotations (manual: 3 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U312869	Tomato 200607 #1
SGN-U312870	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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