Sol Genomics Network

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This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been split into SGN-U580887 and SGN-U593391 in the current build, Tomato 200607 #2

Unigene SGN-U213409

Unigene Basic Information

Unigene ID:	SGN-U213409
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	213409
mRNA sequence:	Length: 1096 bp

>SGN-U213409 Lycopersicon Combined #3 (72 members)
GCCCTAGAACCTTCTTGAGAGAACCCCTTTTTGTATTCTTTAGCTTTCTCTCTCTAGAAGAATTTCTCTTTTTTCCCCTCTCTCTCTCTG
AAGTAGTATGGCTTCACAAGCTAGTCTTCTCCTTCAGAAACAACTTAAGGATCTCTGTAAACACCCAGTTGATGGATTTTCGGCTGGTTT
GGTTGATGAAAGCAACTTGTTTGAATGGAGTGTCACCATTATTGGACCTCAAGATACTTTATATGAAGGGGGTTTCTTTAATGCTATCAT
GAGCTTTCCTGAAAATTATCCCAACAGTCCTCCAACTGTAAGGTTTACCACAGAGATCTGGCATCCAAATGTTTACTCTGATGGGAAGGT
TTGCATCTCAATTCTTCACCCCCCTGGTGATGATCCAAATGGCTATGAGTGTGCTAATGAGCGTTGGTCTCCTGTCCACACGGTGGAGAG
TATAATTTTGAGCATCATATCCATGCTTTCAAGTCCTAATGATGAGTCCCCTGCTAACGTGGAAGCTGCTAAGGAATGGAGGGAAAAAAG
GGATGAATTCAAGAAAAGGGTCAGTCGTTGTGTAAGACGGTCACAAGAAATGTAGTGAACACAGAAATGTACCAATGCATTTTATGATAA
AGCTGATAAAATGGCTTATCATCGTTCTTTTGGCTGGATGTTCATTGCTACAAAGTGTAGAATTTGTCAACCGTTAGACATTGTGTATTG
TGCCTTTCTAGTCTTACTTTGAAGGTTCATTGCCAGTTATATTTCTTGGAAAAACTTTATAGGTTGCTGAACTTTGTGATCTTTGGCCTT
CTCTTTTTTTTTTTATGTTATATCAAGCTTTATGTCTCTTCCACCCCAGAAGTGAAAGAAGGCACATTAATGAAAAAAAGTGGATGGGTT
GATATTTGGTTGTAATATATCAAGTCATATTTTCCCATTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAATTTTGGGGGGGGGGGGCCCCCCCCCCCCCCCCCCCCAGGGGGGGGTTTTATATTTTGGGGGGG
GCGTTTTTAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	8
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	8
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	14
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	6
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	4
Solanum lycopersicum	cTOS	suspension cultures	8026	5
Solanum lycopersicum	cTSB	seed	1880	3

mRNA member sequences (72)

Alignment image suppressed for unigene with 72 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	25	UBQ_conjugat	316
2	21990	UBQ_conjugat	232
5	56280	UBQ_conjugat	146

Preceding Unigenes (1)

Unigene	Build
SGN-U143947	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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