Sol Genomics Network

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been superseded by SGN-U581443 in the current build, Tomato 200607 #2

Unigene SGN-U214264

Unigene Basic Information

Unigene ID:	SGN-U214264
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	214264
mRNA sequence:	Length: 1332 bp

>SGN-U214264 Lycopersicon Combined #3 (40 members)
AAAAGAAAAACACTGAGATCTCTATTTAGCACGGAGCAGAAGCGCCATGGCTTCGTGCTGTTCATTGAGCTTCTCAACAGTCTCTTCAAA
GCCTAACAAGCCTTACTCATCACCAATTTCTTCTTCTCTTGAGCTCCCCTTTACTTCCCAGTTGCCATTTTCTAAAAAATATTCACTTTA
TTCCAATCATACCCTTCTCCAAACTCAATGCCGGAAAACCCAATCACCGGATTGTCCCAGTTTCTTGGTTGTGGGATCTGCGAAAAAGCA
AGAACCTTTGAGGGTAATGATATCGGGAGCTCCTGCTTCTGGTAAAGGAACGCAATGCGAGCTCATTACCAAGAAGTACGATTTGGTGCA
TATTGCTGCTGGAGATTTATTGAGGGCTGAAATTGCTGCAGGCACTGAAAATGGGAGGAGAGCAAAGGAGTATATGGATAAAGGACAATT
GGTACCAAACGAGATAGTTGTAACGATGGTCAAAGAGCGGTTGATGTGTCCAGACTCTCAAGAAAAGGGTTGGCTTTTAGATGGATATCC
TCGGAGCTTGTCTCAAGCAGTAGCTCTCAAAGAGTTCCAGCCAAACCTTTTCATTCTTCTGGAAGTACCTGAAGAGATACTTGTTGAGAG
AGTGGTTGGCCGTAGACTAGATCCTGTAACTGGGAGAATATACCATTTGAAGTATTCTCCGCCAGAGACCGATGAAATCGCTGCAAGGCT
TACCCAGCGCTTTGATGATACAGAAGAAAAGGTGAAGCTGCGTCTGCACACTCACCGTCAAAATGTGGAATCAGTTCTCTCAATGTACAA
AGATACTATATTCCAGGTGGACGGGAGCGTTTCCAAAGAGGAAGTATTTGCTCAAATTGATGGTGCATTAACTCAACTTCTTGAAGCAAA
GGAGTGAAGATTTGGAACCGTAATGTCATAGAGATCAGGAAAAATCTGCAGAATGTACCATGTAATACTCAGGAGGATCATCGAAGACAA
AAGAGTAACATTGTTGGTTGCTATCCCTCTTATACAAATGTATGAAATGTTTATGTATATCGTATTTGCTTCCAACTATCTATGTGGATA
TTCATTGAATCAGATTCAAAGTTTACTACAAAACTTGTTTTGTTGTAAGGCCCAGCTCGCTAGTGATATTGTTAGCTTCGAGTTTACACC
TATCCGGCTTTAAGACGTCATTAGGGTGTAAGACCTGCTTATTTATGTACTCAACATATCTCATGTATTTTTGCCTATTTGGGACTCTTA
ATCATGGACATAAATACCCAGATTTCTGATTAATCCAACTTCTGAAGTTTCCAATCACAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	14
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (40)

Alignment image suppressed for unigene with 40 aligned sequences.
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Markers Information (0)

Expression Data (7)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	306	UMP_CMP_kinase Adenylate_kin Adenylate_kin1 Adenyl_kin_sub	52
2	23532	UMP_CMP_kinase Adenylate_kin Adenylate_kin1 Adenyl_kin_sub ADK_lid	12
5	62878	UMP_CMP_kinase Adenylate_kin Adenylate_kin1 Depp_CoAkinase Adenyl_kin_sub ADK_lid Thymidylate_kin	3

Preceding Unigenes (1)

Unigene	Build
SGN-U144684	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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