Sol Genomics Network

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Unigene SGN-U269022

Unigene Basic Information

Unigene ID:	SGN-U269022
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269022
mRNA sequence:	Length: 1784 bp

>SGN-U269022 Solanum tuberosum #4 (24 members)
CCGAACTCTGTTCAGATACAGAAGTGAGTGCTTTGATTCGAAAAAAAGTGACTCTTGTGATTCGAGTTCTTTCAATAGGCACCCTGGAGT
GTGGCTCGGTTGTCCCAATCCTTGGTTCTTCTAGTCATAGTAGACAAGTCGTGTAGTTAGGGAGGTGGGATAGCAAAGATTCCTGTTCAA
CTTGTAAACCTGGTGCTGTGTTTGCAAGATGTATTGCTGCCATGTAATGGTGGGTCTGTCAATAACAATTTATTTTTGTTTGAGGAGCAA
TCTCTTATATTTTCCCTTTGGATACTCTTGAACCAGATGACATTCAATTCTTTATTGATGCTTGTGTGTGTGAAGTTATCACTAATGGGA
TATGTTGATTTGTTTAAAAATATTAGTCCAAGAATCATTTTTTAAAATCTCCATCTTACAATATATTCATGGCTCTTCAGGTTGCTGCAT
TGCTTCCTTCTACTTTCTCTATTCCCAAGGAGGGGAAAACTAGTGCAACTTTGAAGGATTCTAGTCTCTTTGGAATCTCTCTCTCTGACC
ATGTTAAATCTGATTTTGGCTCTTCATTCAAAATCAAGAGCGGAAGAAAGTCATCCCTCGGAGCTATTAGAGCCGAGACAATGATTGCAT
CTCCCGGTGTTACGAATGCCCCTGTGACAGGAAAGAAAACCTTAAGAAAAGGTTGTGTAGTAATCACTGGAGCCTCTTCAGGACTAGGAC
TAGCAACAGCAAAAGCTCTGGCTGAGACAGGGAAATGGCATGTAATTATGGCATGTAGGGACTTTCTTAAAGCTGAAAGAGCAGCAAAAT
CAGCAGGGATGCCTAAAGAGAATTACACTATAATGCATTTAGACCTTGCATCGCTTGACAGCGTCAGACAATTTGTCGATAACTTTAGGA
GATCAGGCAATCCTCTTGATGTATTGGTTTGCAATGCAGCTGTTTATCAGCCTACCGCGAAAGAGCCTTCGTTCACAGCTGAAGGATTTG
AGCTTAGTGTTGGGACTAACCATCTTGGTCATTTCCTTCTTTCAAGATTGTTGATTGATGATTTGAAGCAGTCTGATTACCCTTCAAAGA
GACTCATCATTGTTGGATCGATTACAGGAAACACTAACACATTGGCTGGAAATGTACCTCCAAAGGCCAACCTCGGGGACTTGAGGGGTT
TGGCAAGAGGGCTCGATGGACTTAACAGCTCGGCCATGATTGATGGTGGTGACTTTGATGGTGCCAAAGCATACAAAGACAGCAAGGTTT
GCAATATGCTCACTATGCAGGAATTCCATAGACGATACCACGAGGAGACTGGCATCACATTTGCCTCTCTATACCCTGGCTGCATCGCGA
CAACAGGGCTATTCAGAGAACATATCCCCTTGTTTAGGCTACTTTTCCCTCCATTCCAGAAGTTTATTACCAAGGGATTCGTCTCCGAGG
CAGAATCTGGAAAGAGACTTGCACAGGTTGTAAGTGATCCAAGTCTAACAAAATCAGGAGTGTACTGGAGCTGGAACAAGAACTCTTCTT
CTTTTGAGAATCAGTTGTCAGAAGAAGCCAGTGACGTTGAGAAAGCGCGTAAAGTGTGGGAAGTCAGTGAGAAACTCGTGGGGTTGGCTT
AGATTTTGCGGATTGAGTTCAACCATCACCAAGACGAACAAGAAAAGGGAGTTGATGAGGGAGAATTTGAATCAAGAGTCTGTTTTGTTG
TAGTTAAGAGTTGTCACTTTGTAAAAATTTTGAGTTGGGAATAAATATCAATCTATCCTGTTTTCTTCGAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ200364	syntaxin

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	4
Solanum tuberosum	MXLF	Leaves	6585	2
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	7
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	4
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	2

mRNA member sequences (24)

Alignment image suppressed for unigene with 24 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 6 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	17	Adh_short_C2	380
2	22706	ADH_short Prochl_reduct Adh_short_C2	21
5	56903	ADH_short Prochl_reduct Adh_short_C2	20
1.1	101390	Glucose/ribitol dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	342
2	119148	Short-chain dehydrogenase/reductase SDR - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491) Light-dependent protochlorophyllide reductase - Cellular Component: chloroplast (GO:0009507) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: protochlorophyllide reductase activity (GO:0016630) - Biological Process: photosynthesis dark reaction (GO:0019685) Glucose/ribitol dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	19
5	129561	Short-chain dehydrogenase/reductase SDR - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491) Light-dependent protochlorophyllide reductase - Cellular Component: chloroplast (GO:0009507) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: protochlorophyllide reductase activity (GO:0016630) - Biological Process: photosynthesis dark reaction (GO:0019685) Glucose/ribitol dehydrogenase - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity (GO:0016491)	18

Preceding Unigenes (1)

Unigene	Build
SGN-U243699	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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