Sol Genomics Network

Unigene SGN-U269200

Unigene Basic Information

Unigene ID:	SGN-U269200
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269200
mRNA sequence:	Length: 2304 bp

>SGN-U269200 Solanum tuberosum #4 (27 members)
CGGAGGTATTGAGGCAGAAGCTGCAATGCTTGGCCAGCCAATGAGCATGGTGTTGCCGTGGAGTTGTTGGGTTCAAGCTATCAGGNAATT
TGCGAAATGGTGTAACTGCCACCGACTTGGTTCTGACTGTCACTCAAATGCTGAGGAAGCATGGTGTTGTTGGAAAGTTTGTTGAATTCT
ATGGTGGTGGAATGAGTGGTCTTTCATTGGCTGACAGGGCCACCATTGCAAACATGGCTCCTGAATATGGTGCAACAATGGGTTTCTTCC
CTGTAGATCATGTTACTCTGGAATACCTCAAGTTAACGGGGAGAAGTGATGAGATAGTTGGAATGGTAGAGGCATATCTCCGTGCAAATA
ATATGTTTGTCGATTATAATGAGCCTCAACAAGAAAAAGTGTACTCTTCTTATTTGAACCTAGACCTTGCCGATGTTGAACCATGTCTGT
CAGGGCCAAAGAGACCTCATGACCGTGTGCCTTTGAAAGAAATGAAGTCTGACTGGCATGCTTGCCTAGATAACAAAGTTGGATTCAAGG
GATTTGCTGTGCCAAAAGAGGTGCAAGATAAAGTGGCCAAGTTTTCCTTCCATGGGCAACCTGCAGAGCTCAAACATGGCAGTGTTGTGA
TTGCTGCTATCACAAGTTGCACAAATACATCCAATCCCAGTGTTATGCTAGGAGCAGCTCTGGTTGCCAAAAAGGCATCTGAGCTGGGTC
TACATGTTAAGCCATGGGTTAAAACAAGCCTTGCCCCAGGCTCTGGTGTTGTTACAAAATATTTACTCAAGAGTGGTCTACAGAAGTATT
TAAATCAGCAAGGTTTCAACATTGTTGGCTATGGCTGCACCACTTGTATCGGGAACTCAGGGGACTTGGATGAATCTGTTGCTTCTGCCA
TATCAGAGAACGACATTGTTGCTGCTGCTGTACTCTCCGGAAATCGGAACTTTGAAGGGCGTGTTCATGCCTTGACAAGAGCAAACTATC
TTGCTTCACCTCCCTTGGTGGTTGCCTATGCTCTTGCTGGCACTGTTGATATAGACTTTGAGAAAGATCCAATTGGAGTGGGAAAGGATG
GTAAGGATGTGTACTTCAGGGATATATGGCCATCAACTGAAGAAATTGCTGAGGTTGTTCAATCAAGTGTATTGCCAGACATGTTCAAGA
GTACATATGAAGCTATTACAAAGGGAAATACCATGTGGAATGAATTATCTGTGCCAACAACAAAGCTGTACCAATGGGATCCTAAATCTA
CATACATCCATGAGCCACCATATTTCAAGGGTATGACCATGGATCCTCCTGGACCTCATGGAGTGAAGGATGCTTACTGCTTGCTGAACT
TTGGCGACAGTATTACTACTGATCACATTTCACCTGCCGGAAGCATTCATAAAGATAGCCCTGCTGCTAGGTACCTTATGGAGCGGGGTG
TCGATCGCAGGGACTTCAACTCATATGGTAGCCGTCGTGGTAATGATGAGATTATGGCTAGGGGTACTTTCGCCAATATCCGCCTTGTAA
ACAAGCTGTTAAATGGGGAGGTTGGTCCAAAGACAGTCCACATTCCTTCTGGAGAAAAGCTATCTGTGTTTGATGCTGCTATGAAATACA
AATCTGCTGGACAAAGCACTATTATCTTGGCTGGAGCTGAATATGGAAGTGGAAGCTCCCGAGATTGGGCTGCCAAGGGACCAATGTTGT
TGGGAGTTAAAGCTGTAATTGCGAAGAGCTTCGAGAGGATTCATCGCAGTAACTTGGTAGGAATGGGTATTGTGCCTCTATGCTTCAAGG
CTGGGGAGGATGCAGATACACTTGGATTGACAGGTCAAGAGCGATATACCATTGATCTTCCTGAAAATATTAGTGAGATCCGCCCTGGGC
AAGACGTTACTGTACAAACAGATACTGGAAAATCCTTCACCTGCATAGTGCGTTTCGACACTGAGGTGGAGTTGGCTTATTTCAACCATG
GAGGTATTCTTCAATATGTCATTCGTCAGTTGACACAGCGATGAGGATCACTTTGATTATTCGGCCACGTTTACAAGCTGCCTGCTTAAT
TGCGGGAAGATGACAGAGGGATCATCTTCTCAATAGAGAAACTTGACAAGGGAATAAAGGATTTTAAAACTTTTTTATGTCCCTTTTGTT
GGACAAAGTGTTGTTTATTTACTTCTAAAGGCACTGTCAAGCTAGTCTTTTTTCCAGCGGATAGCATTATACCATTTTTTGGTAATAAAA
TTTATATTGAGATTCTCTTCAAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
X97012	aconitase/aconitate hydratase	aconitase/aconitate hydratase

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	3
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	PPC	leaf 6 week old	5062	3
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	3
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	4
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (27)

Alignment image suppressed for unigene with 27 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 6 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	583	Cis-H_aconitase LeuC Aconitase_1 Aconitase_N Homoaconitase Aconitase_mito Aconitase_put	31
2	22702	Cis-H_aconitase LeuC Aconitase_1 Aconitase_N Aconitase_C Homoaconitase Aconitase_mito Aconitase_put	21
5	56901	Cis-H_aconitase LeuC Aconitase_1 Aconitase_N Aconitase_C Homoaconitase Aconitase_mito Aconitase_put	20
1.1	101936	Aconitate hydratase N-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: lyase activity (GO:0016829)	28
2	119188	Aconitate hydratase N-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: lyase activity (GO:0016829) Aconitate hydratase C-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: hydro-lyase activity (GO:0016836) Aconitate hydratase 1 - Molecular Function: RNA binding (GO:0003723) - Molecular Function: aconitate hydratase activity (GO:0003994) - Molecular Function: iron ion binding (GO:0005506)	19
5	129539	Aconitate hydratase N-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: lyase activity (GO:0016829) Aconitate hydratase C-terminal - Biological Process: metabolism (GO:0008152) - Molecular Function: hydro-lyase activity (GO:0016836) Aconitate hydratase 1 - Molecular Function: RNA binding (GO:0003723) - Molecular Function: aconitate hydratase activity (GO:0003994) - Molecular Function: iron ion binding (GO:0005506)	19

Preceding Unigenes (1)

Unigene	Build
SGN-U243978	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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