Sol Genomics Network

Unigene SGN-U270981

Unigene Basic Information

Unigene ID:	SGN-U270981
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270981
mRNA sequence:	Length: 1457 bp

>SGN-U270981 Solanum tuberosum #4 (15 members)
AAAGGAAAAACCCTAGAAGCTCACTTTCTCCTCAAGATCAAAGTCGGATCAAATCGCCTCCAACAATGTCTGCCATGATGCAACCTCAGA
TCATATTGCTGAAGGAAGGGACAGACACGTCCCAAGGGAAGGCACAGTTGGTGAGCAACATAAATGCATGTATGGCTGTGGCTGATGTGG
TGCGTACCACCCTTGGCCCTAGGGGTATGGACAAGTTGATCCACGATGATAAAGGAAACACCACTATTTCGAATGATGGTGCCACTATAA
TGAAGCTTCTAGACATAATTCATCCTGCAGCAAAAATACTTGTTGACATTGCCAAGTCCCAAGACTCTGAGGTTGGTGATGGAACCACTA
CAGTTGTTCTGCTTGCAGGAGAATTTTTAAAGGAAGCCAAGCCTTTTGTCGAAGAGGGTGTCCACCCTCAAAATCTTATTCGTAGTTATC
GAACCGCTTCTAATATGGCAATCGAGAAGGTAAAAGAATTGGCTGTTAGCATAGAGGGAAAAAGTTTGGAAGAAAAGAAAAGTCTGCTTG
CGAAGTGTGCTGCTACAACTCTGTCATCAAAGCTCATTGGAGGGGAAAAGGAATTCTTTGCATCCATGGTTGTGGATGCTGTTCTTGCAA
TCGGAACTGATGATAGGCTGAACATGATTGGAATTAAGAAGGTCCCTGGAGGTACTATGCGGGATTCCTTCCTTGTAAATGGTGTTGCCT
TTAAGAAGACATTTTCCTATGCTGGTTTTGAACAGCAGCCAAAGAAGTTTGTAAACCCCAAGATACTTTTACTGAACATAGAGTTGGAGC
TAAAATCAGAAAAAGAAAATGCAGAGATAAGGCTCTCAGATCCAGCGCAATATCAGTCAATTGTTGATGCAGAGTGGAATATCATTTATG
ACAAGTTGGATAAATGTGTAAAGAGTGGTGCCAAAGTTGTTTTGTCTAGACTCGCTATTGGTGATCTGGCCACACAGTATTTTGCAGACC
GAGATATATTTTGTGCTGGTCGTGTCTCTGAAGAGGATCTGCAGCGGGTAGCGGCTGCCGCTGGTGGAACAGTGCAGACAACTGTGAACA
ATGTTATTGATGAGGTTCTTGGCTCTTGTGAGATTTTTGAGGAGAAGCAAGTTGGAAATGAGAGATTCAATATATTTAGTGGATGTCCCT
CGGGCAAGACCGCCACTATTGTCCTTCGTGGTGGAGCAGATCAGTTCATTGAGGAAGCTGAGAGAAGCTTGCATGATGCTATTATGATTG
TTCGAAGGGCTGTGAAAAACTCTACGGTTGTTCCTGGAGGTGGTGCGATAGATATGGAAATAAGCCGTTTCTTGAGGCACCATGCTCGAA
CAATTCAAGGGAAATCTCAGCTCTTCATAAACTCTTATGCAAAAGCTCTTGAGATTATCCCCCGTCAGCTATGTGACAATGCTGGGTTTG
ATGCAACTGATGTGCTG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	SWST	Stolon	5942	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	6
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	2

mRNA member sequences (15)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	86	Cpn60/TCP-1	147
2	22101	Cpn60/TCP-1 Chaperonin_TCP-1	67
5	57156	Chaprnin_Cpn60 Cpn60/TCP-1 Chaperonin_TCP-1	16
1.1	101419	Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	214
2	118577	GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	50
5	130313	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) Chaperonin TCP-1	11

Preceding Unigenes (1)

Unigene	Build
SGN-U245085	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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