Sol Genomics Network

Unigene SGN-U271194

Unigene Basic Information

Unigene ID:	SGN-U271194
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	271194
mRNA sequence:	Length: 1084 bp

>SGN-U271194 Solanum tuberosum #4 (7 members)
CTCTCTAACGCTGAATTACATCAAGTCTTCTCAGAGTGGAACAAAGGAGAGCTTTTGAGCTTCTTGATTGAAATCACTGCTGATATATTT
GGAGTCAAGGATGATAAAGCAGACGGGTATTTGGTGGACAAAGTTTTGGATAAAACTGGGATGAAAGGTACTGGTAAATGGACTGTTCAG
CAAGCCGCTGAATTGTCAGTTGCTGCACCTACAATAGCTGCATCATTGGATTCAAGATTCCTTAGTGGGTTAAAAGATGAAAGAGTTCAA
GCAGCCAAAGTATTTGAATCTAGCGGGGTTAGTGATATCTTTGTTGAGCAGACCGTGGACAAGAATCAATTGATTGACGATGTGAGAAAG
GCACTTTATGCATCCAAAATATGTAGCTATGCTCAAGGCATGAATTTGATAAGGGCAAAGAGTGTTGAAAAAGGATGGGACTTGAAACTA
GGGGAGCTTGCTAGGATTTGGAAGGGTGGTTGTATTATCCGTGCTATATTTTTGGACCGGATCAAGGGGGCTTATGACAGAAACCCAGAT
CTTGCTAACCTACTCGTGGATGAGGAGTTTGCAAAAGAGATGGTTGAACGTCAGTCTGCTTGGCGAAGAGTAGTCTGCCTAGCTATAAAC
TCAGGCATTAGCACACCGGGTATGTCTTCAAGTCTTGCTTACTTTGACTCATACAGGAGGGAAAGTCTTCCTGCCAATTTGGTTCAGGCT
CAAAGGGATTACTTCGGTGCTCATACTTACGAGAGGATTGATGTGCCAGGGGCTTTCCATACTGAGTGGTTCAAGATTGCCAAACAGTCG
AAGAACTGAGTTCTTCTGATGTTTTCCTTTTATTTTGACCTGATTGAATAAAGTTCTTGTTTTCATTGAATCTAGGAGGTTGTTAGGTCC
TGTTAGTATCACCTTGTCATGTGGTCTCTCAAATGTTGGAACTTTACCTATGTTGTTGTTCATCCTATTTGTATTGTGCCTTTTCTCGCA
TTTCATGTCCTTTTAGTTACATACAATCATATAAAAACAGAGAATGTATTTTTCCATGTGCATTTCTCATTTTCTTTTGTTAAAAAAAAA
AAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	SWST	Stolon	5942	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (7)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	293	3hydroxisobut_dh Tartro_sem_red Gnd_rel	54
2	22721	3hydroxisobut_dh Tartro_sem_red 6PGD_decarbox Gnd_rel 6PGD_C 6PGD 6PGD_NAD	21
5	56870	3hydroxisobut_dh Tartro_sem_red 6PGD_decarbox Gnd_rel 6PGD_C 6PGD 6PGD_NAD	21
1.1	101660	6-phosphogluconate dehydrogenase NAD-binding - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098)	49
2	119322	6-phosphogluconate dehydrogenase C-terminal extension - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt oxidative branch (GO:0009051) - Molecular Function: NADP binding (GO:0050661) 6-phosphogluconate dehydrogenase C-terminal-like 6-phosphogluconate dehydrogenase C-terminal core - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt oxidative branch (GO:0009051) - Molecular Function: NADP binding (GO:0050661) 6-phosphogluconate dehydrogenase - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098) 6-phosphogluconate dehydrogenase C-terminal - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098) 6-phosphogluconate dehydrogenase NAD-binding - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098) 6-phosphogluconate dehydrogenase decarboxylating - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098)	17
5	129666	6-phosphogluconate dehydrogenase C-terminal extension - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt oxidative branch (GO:0009051) - Molecular Function: NADP binding (GO:0050661) 6-phosphogluconate dehydrogenase C-terminal-like 6-phosphogluconate dehydrogenase C-terminal core - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt oxidative branch (GO:0009051) - Molecular Function: NADP binding (GO:0050661) 6-phosphogluconate dehydrogenase - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098) 6-phosphogluconate dehydrogenase C-terminal - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098) 6-phosphogluconate dehydrogenase NAD-binding - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098) 6-phosphogluconate dehydrogenase decarboxylating - Molecular Function: phosphogluconate dehydrogenase (decarboxylating) activity (GO:0004616) - Biological Process: pentose-phosphate shunt (GO:0006098)	17

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U245321	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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