Sol Genomics Network

Unigene SGN-U272715

Unigene Basic Information

Unigene ID:	SGN-U272715
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	272715
mRNA sequence:	Length: 1775 bp

>SGN-U272715 Solanum tuberosum #4 (10 members)
CCCAATCGGAAACCGTTGACGCTGATCCCGCCGGCGAGACCAACCCCCAACCATAGACGTATTTGAACTGTTGGGTTATTTATGAAGAAA
CCAAAAATTTCAACCAAGACACATTTACTATGTCACGTAACATACAGTTGTGGCAACCAAAGCTGATGGGTCGCCATAAATTGACATTTC
TTGTTTTTTCTTTATAAAGAAATACTCCTCACCTAATAGTATGAGCACATTGAAATTTCTCAACTACTTCCTCTGTTCTAACTCTTCATA
TATTCAGTATCGTTTTGCCTGTCCCAAAAATCATAGCTTTATCTCATCCCAACTTCGCCTCTTATCCTCCGCTACAAGTAGCATAAGCTA
TATGGAGCTGGTCAAGGAAGTTGCCAGCAAGGGACCTGAATCGCAGAAGAATGTTGCGATAAGAGCTGATGAAAAGAGCTACAGTTACCT
GCAGTTGATATCATCTGCGAGGAAAATATCAAATTTGTTAAGCAAGCTAGATCTTAAAACCGACAAAGGCATCAAAGAAAATGAACATCA
CAATGGAGCAAGAGTAGGGATTGTGGCCAAACCTTCTGCTGAGTTCGTTGCTGGAATACTAGGGACCTGGCTTAGTGGAGGTTGTGCAGT
TCCTCTTGCTCTGAGCTACCCTGAGAGTGAACTGCTACATGTGATGAATGACTCGGACATCTCCATAATTTTGAGTACTGAAGACCACCA
AGAACTTATGAATGCAATTGCAGCAAAAACTGGTGCTCAGTTATCTCTCATTCCTTCAATTCCCGATGTGCATTCATCAACAAAGCATGA
CCAGTCAAAAGACATGGTTTCTGACGGTCAACAAGATCTGCTAGAAATCAATTCCTACGGCGAGAACCCTGCTTTTATCTTGTACACCAG
CGGCACAACAGGGAAACCAAAAGGAGTTGTCCACACACACAATGGAGTCTTAGCACAGGTCCAAATGTTAGCTAATGCATGGGAATACAC
GCCCAAGGATCAATTTCTGCATTGTCTACCACTCCATCATGTGCATGGACTTTTCAATGCTTTGCTTGCCCCTCTTTATGCAGGTTCCAC
GGTCGACTTTGTGCCAAAATTCAGTGTGAGGGGAATTTGGCAGAGATGGCGTGAATCATATCCTACAGATGGGACTATAATGGATAATGC
CATCACAGTGTTTACTGGAGTTCCAACTATGTATGCACGATTGATACAAGGTTATGAAGCAATGGATCCAGAACTAAAAACAGCATCTGC
TTCAGCAGCAAGGCACTTGCGTCTTATGATGAGTGGCTCCTCTGCACTTCCTCTGCCTGTCATGCAGCAGTGGGAAACCATTACAGGACA
CCGGTTATTGGAGCGTTATGGCATGACTGAGTTTGTGATGGCTATCTCTAATCCCATAAGTGGCAAGCGCAAAGGAGGTACTGTTGGCAA
GCCATTTCCAGGTGTGCAGGCCAAGATTCTTTTGGACGATGAAAGTAGTAATGACAAAACTGGAGTTGGGGAGCTCTGCATTAAGAGCCC
ATCATTGTTCAAAGAATACTGGAAATTACCTGAGGTAACCAAGCAGTCATTTACTGATGATGGATATTTCAAGACTGGAGATACTGTTAC
TGTTGACGAAGACGGATATTACATCATTCTGGGACGTACAAATGCTGATATTATGAAGTTTGGTGGATACAAATTGTCAGCATTGGAAAT
TGAAGCAGTTCTATTGGAGCATCAAGCTATATCAGAGTGCTGTGTGTTAGGCTTGCCTGACAAAG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STM	mixed tissues	14805	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	4
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1

mRNA member sequences (10)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	51	AMP-bind	230
2	22053	AMP-bind	93
5	58446	AMP-bind Acac_CoA_synth	8
1.1	101420	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	214
2	118495	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	81
5	131401	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	7

Preceding Unigenes (1)

Unigene	Build
SGN-U246220	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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