Sol Genomics Network

Unigene SGN-U274114

Unigene Basic Information

Unigene ID:	SGN-U274114
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	274114
mRNA sequence:	Length: 670 bp

>SGN-U274114 Solanum tuberosum #4 (6 members)
ATTTGTTGAAGACGAAGAAGGAAGAAGAAAGATGAATGCTCCAGATCGTTACGAACGATTCGTTGTTCCAGAAGGCGTTAAGAAGGTTTC
GTATGAGAGGGATACGAAGATCATGAATGCAGCTACATTTACTGTTGAAAGAGAGGACCATACAATCGGGAATATTGTTCGCATGCAACT
ACATAGGGATGATAATGTTCTGTTTGCTGGGTACAAGTTGCCTCATCCTCTTCAGTACAAAATCCTGCTTCGGATCCAAACAACAAGCCA
GTCCTCACCTATGCAGGCATATAACCAGGCTATTAATGATCTTGACAAGGAACTTGATCATCTGAAGAGTCAGTTTGAGGGTGAGTTGGC
CAAGCACACGAGGGACTACTAATCCTTCGACAATGATATTTAGTATTCAACAACGATGCCTCAAAACAGTTTCCTAGTTCGATATAGCCT
GTATGTAACTCTTGTTGGTCTGTATGTATGATGTTCAACTAGCAGCTACAGTTAGGCTCGGGCGATAGCCCTGTGCCCGGGCTTCGTTTT
AATTACTTTGAGGTCTGCTTTATATGCCTCAAGTTTAGGTTCTGAAATTGTTAATTTGGCATGCTTTTCATATCCATTTGGTTTTCACTT
TTCAATTATCTTAGTAACTGTTTTTAAAAATGAAGTTTTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (6)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1666	RNA_pol_L	11
2	25364	RNA_pol_L	6
5	59384	RNA_pol_L	6
1.1	102792	DNA-directed RNA polymerase 13 to 16 kDa subunit - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase dimerisation - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) - Molecular Function: protein dimerization activity (GO:0046983) RNA polymerase RBP11-like - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350)	10
2	122502	RNA polymerase RBP11-like - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase dimerisation - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) - Molecular Function: protein dimerization activity (GO:0046983) DNA-directed RNA polymerase 13 to 16 kDa subunit - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350)	5
5	132700	RNA polymerase RBP11-like - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase dimerisation - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) - Molecular Function: protein dimerization activity (GO:0046983) DNA-directed RNA polymerase 13 to 16 kDa subunit - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350)	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U252205	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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