Sol Genomics Network

Unigene SGN-U274290

Unigene Basic Information

Unigene ID:	SGN-U274290
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	274290
mRNA sequence:	Length: 1077 bp

>SGN-U274290 Solanum tuberosum #4 (6 members)
CTGAAAAAAATGGCTGGCTGCTCTTGTCTCCGGCCACCACCATCCGCCTTAAACCCTTCTACGCCGTCCGGTTCTTCACTCATTACAGAA
GTCCTATCAAAGTCTTAAACCCCAATTTCTACTCATCATACCCTCCAAAGCTGCATCCAACACCCTACTTGAGCCGTCGACGGAGCTTTT
GCTCTGTGGTTTCCGCCGCTATTTCATCCGGAGAAGCAGTTGAAAGACCCAAATTTGAAAATATTGAGACAAAAGAGGGTGTAAAAACTG
AACAAGTTAGGGAATTTCGGAAAAGGTTGAGGGTTGCGGACATAAAGGGAGGGCCTGAAGAAGGTTTGGCCCGTCTTGGTGAGACTTTGG
TGGTTAGAGGATGGGTTCGCACGGTTAGGGCTCAGAGCAGTGTGACGTTTATTGATATTAATGATGGTTCTTGTCTTTCAAATATGCAAT
GTGTTATGGGTTCTGATGCTGAGGGTTATGATCAGGTGGAGAATGGCTTAATTTCAACTGGTGCATCAGTATGGATTGAAGGTACTGTAG
TCAGCAGCCAAGGGTCAAAGCAGAAAATTGAGTTGAAGGTTCAGAAACTTGTAGTGGTTGGTGAAAGTGATCCTTCTTTCCCCATCCAGA
AGAAAAGGGTCAGCAGAGAATTCTTGAGAACAAAGGCTCACCTTCGCCCTCGAACAAACACTTTTGGTGCGGTTTCGAGGGTGAGGAATG
CTTTATCCTATGCCACACACAAGTTTTTCCAAGAAAATGGCTTTGTTTGGGTCTCAAGTCCAATAATCACTGCTTCTGATTGTGAAGGAG
CTGGCGAGCAATTCTGTGTTACTACTTTGATTCCAAACTCCAATGAAGGTGGAGATTCACCAGTTAGTGCTATTCCTACTACTGAATCTG
GTTCTGTTGACTGGTCACAAGACTTCTTTGGGAAACGAGCATATTTAACAGTGTCTGGGCAACTCAATGGTGAAACATATGCTACTGCGC
TCTCCGATATCTACACCTTTGGCCCTACATTCAGAGCAGAAAATTCTAACACTTCCAGACACTTAGCTGAATTCTGGATGATTGAAC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1

mRNA member sequences (6)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 4 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	337	AsnS AspS_arch tRNA-synt_lys_2 tRNA_anti tRNA-synt_2	49
2	23204	AsnS AspS_arch tRNA-synt_lys_2 tRNA_anti tRNA-synt_2	15
5	60435	GenX AsnS AspS_arch tRNA-synt_asp tRNA-synt_lys_2 tRNA_ligase_II tRNA_anti tRNA-synt_2 tRNA-synt_2d AspS_bact	5
1.1	101603	tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418)	62
2	119485	tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418)	15
5	132765	Aminoacyl-transfer RNA synthetase class II - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) nucleic acid binding OB-fold tRNA/helicase-type - Molecular Function: nucleic acid binding (GO:0003676) Asparaginyl-tRNA synthetase class IIb - Molecular Function: asparagine-tRNA ligase activity (GO:0004816) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: asparaginyl-tRNA aminoacylation (GO:0006421) tRNA synthetase class II (D K and N) - Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: tRNA aminoacylation for protein translation (GO:0006418) Aspartyl-tRNA synthetase class IIb - Molecular Function: aspartate-tRNA ligase activity (GO:0004815) - Molecular Function: ATP binding (GO:0005524) - Biological Process: aspartyl-tRNA aminoacylation (GO:0006422) Nucleic acid-binding OB-fold - Molecular Function: nucleic acid binding (GO:0003676) Nucleic acid-binding OB-fold subgroup	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U247648	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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