Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577798, SGN-U578672, SGN-U592937, and SGN-U593489 in the current build, Tomato 200607 #2

Unigene SGN-U312789

Unigene Basic Information

Unigene ID:	SGN-U312789
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312789
mRNA sequence:	Length: 2061 bp

>SGN-U312789 Tomato 200607 #1 (75 members)
TGAATTATTGAAAGTAGATATTATTTTTCAAAGGAGAAAAACAAAAGTGTGTGAATTTAACAAAAATGGAGAGCGCATTGAAGGATCTGT
CAACTCCCACCGGTGGCGTCGAGGATGTTTACGGTGAGGATTGCGCCACTGAGGATCAGTGCATCACTCCCTGGACTATTGCCGTTTCTA
GTGGATACAACTTGTTGAGGGATCCGCGTTACAACAAAGGGCTTGCTTTCACTGAGAGAGAAAGAGATGCTCATTACTTGAGAGGCCTTT
TGCCTCCTGTCATTTCCTCACAGGAACTTCAGGAGAAAAAACTTATGCAGTCTATACGCCAATATGACGTCCCTCTGCACAAATATGTCG
CCATGATGGAATTAGAGGAACGGAATGAAAGGTTGTTTTACAAGCTTCTTATTGATAATGTGGAAGAGTTACTTCCTATTGTCTACACTC
CAACTGTCGGTGAGGCGTGTCAAAAATATGGAAGCCTTTTTAAGCGTCCACAGGGTTTATACATCAGTTTGAATGAAAAAGGAAGAATCC
TTGAGGTATTGAAGAACTGGCCTGAAAAATCAATCCAGGTCATCGTCGTAACTGATGGAGAAAGAATTTTGGGACTTGGTGACCTTGGCT
GCCAGGGAATGGGAATACCCGTGGGGAAATTGGCCCTGTATACTGCACTTGGAGGAGTTAGACCTTCCGCGTGCTTGCCTATAACCATTG
ACGTAGGGACAAACAATGAGAAGTTATTGAACGACGAGTTCTACATTGGTCTCAGACAAAGGAGAGCAACTGGACAGGAATATTATGACT
TTCTTCATGAATTCATGTCTGCTGTGAAGCAAAACTATGGCGAAAAAATTCTCGTACAGTTTGAAGATTTTGCAAACCACAATGCTTTTG
AGCTGTTGGCTAAATATCGTACCTCGCATTTGGTCTTCAACGATGATATACAGGGGACAGCTTCAGTCGTACTTGCAGGGCTTATTGCAT
CCCTTAAGCTACTTGGAGGTGCATTATGTGATCATACATTCTTGTTCCTCGGTGCCGGAGAGGCTGGGACTGGTATTGCAGAACTCATAG
CACTTGAAATTTCAAACAAGACAAATATACCCGTGGAGGAAACACGAAAAAAGATCTGGCTTGTGGACTCAAAGGGTCTTATTGTTAGTG
GTCGCAAGGAAACACTTCAAGCCTTCAAGAAGCCTTGGGCTCATGAACACGAACCTGTCAACAATCTCCTAGACGCTGTTAAGGCCGTTA
AGCCAACTGTCTTAATTGGGACATCTGGAACTGGAAGAACATTTACGAAGGAAGTAGTTGAGGCCATGGCCTGCATGAATAAGAGACCTC
TTATTATGGCTCTCTCAAACCCAACCTCACAAGCTGAATGTACTGCTGAAGAAGCTTATACTTGGAGTGAGGGTCGCGCTGTTTTTGCCA
GTGGAAGTCCATTCCCTTCTTTTGAATACGATGGAAAACTCAACATTCCTGGCCAGGCAAATAACTGTTACATATTCCCTGGTTTTGGTT
TTGGCTTGGTCATGTCTGGCACAATCCGTGTGCACGATGACATGCTTTTAGCAGCTTCGGAAGCTCTGGCTGCTCAAGTAACCGAGGAAC
ATTACGCCAAGGGAATGATATACCCTCCTTTTGCTGATATCCGAAAGATCTCAGCTCACATAGCTGCTAGTGTTGCAGCCAAAGCGTATG
AACTTGGTGTGGCAACACGTCTTCCTCGACCTGCAGATTTGGTGAAGTATGCTGAAAGTTGCATGTATACTCCTAACTACCGAAGCTACA
GATGATTGAATTGATCATATCACGGGGGTTAATCTTGTATGCACCAGAGAGTTATAATAGTTCATTTCGATCTGTCTTTCTTGTAAGCTT
GTGTTCTGTATTAAGCTTTATTTTTTGTTCAGAATTCGAGTTTGTTACGTTGTTTAGTAAACTTGTTATTCAGTGTGTTTCATTTCATAG
CCATAAGAGCTGTAATAATTTGAGGAGTCGTGAAGGTGAATAAATTGAGTTGTTAATGTTATACGGAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
me2	cytosolic NADP-malic enzyme

Genomic locations (0)

None

Library representation (19)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	12
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	8
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	11
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	5
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	5
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (75)

Alignment image suppressed for unigene with 75 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 2 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101519	Phosphoribulokinase/uridine kinase - Molecular Function: ATP binding (GO:0005524) - Biological Process: biosynthesis (GO:0009058) - Molecular Function: kinase activity (GO:0016301)	89
2	118683	Malic enzyme NAD-binding - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) - Molecular Function: NAD binding (GO:0051287) Malic enzyme N-terminal - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) Malic oxidoreductase - Molecular Function: malic enzyme activity (GO:0004470) - Biological Process: malate metabolism (GO:0006108)	36
5	129173	Malic enzyme NAD-binding - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) - Molecular Function: NAD binding (GO:0051287) Malic enzyme N-terminal - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) Malic oxidoreductase - Molecular Function: malic enzyme activity (GO:0004470) - Biological Process: malate metabolism (GO:0006108)	34

Preceding Unigenes (1)

Unigene	Build
SGN-U213052	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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