Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U568266 in the current build, Tomato 200607 #2

Unigene SGN-U312838

Unigene Basic Information

Unigene ID:	SGN-U312838
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312838
mRNA sequence:	Length: 1540 bp

>SGN-U312838 Tomato 200607 #1 (159 members)
TAATCTCTACCGTCCATTCACACATCACAAACAATCTCCACCGTAAGCTCATATTTATTGAAAAAGATACTCCATCTAACTCTTGCTTCT
TTTGTACCAAAGAAAATTCATTCTCTCTTCTATTCTATTCACTTTCTACTAAGAAAATGAAGATGAGGATGATTATGATTTTGTTTCTGT
TGGTAATCATTGGGGGTTTTGTTCATGGAGATGAGAATGAGTCATTCAGGAAGCAACCCACACTAGTGAAGACGGTGAAGGGTACCAAGA
TGTGTGTGAAGGATTGGGAGTGCAACAAATTGTCTAAATTTTGTTGTAATTTGACAATTACTGATTATCTGGATGTTGACCAATTTGAGC
TCCTTTTCACTAAGAGGAACTCACCCGTAGCTCATGCTGTTGGATTCTGGGATTATGGATCTTTCATTAGGGCTGCAGCACTTTACCAGC
CTCTTGGATTTGGTACCACCGGTGGTAAGAAAATGCAGATGAAGGAGATTGCTGCTTTTTTTGGACATGTCGGTAGCAAAACTTCTTGTG
GTTATGGTGTCGCCACTGGCGGACCACTCGCTTATGGTCTATGCTATAACAAAGAAATGAGTCCCAGCCAAGATTACTGTGATGAATACT
TCAAATTAACCTACCCATGCACTCCTGGAGCCAGATATTACGGTCGTGGTGCCTTGCCTATCTACTGGAACTACAATTATGGAGCTATTG
GTGAAGCCCTCAAGCTTAATCTCTTGGATCATCCTGAATACATTGAACAAAATGCTACCATGGCTTTCCAGGCTGCCATTTGGAGGTGGA
TGAACCCAATGAAGAAGGGTCAGCCTTCAGCTCATGATGCCTTTGTTGGCAACTGGAAGCCCACAAAGAATGATACTTTGTCTAAACGAG
TTCCTGGTTTCGGTACCACCATGAATATTCTCTATGGTGATGGTGTTTGTGGCCAAGGTGATGTTGACGCAATGAACAACATCGTCTCCC
ATTACCTCTACTACCTTGACTTGATGGGGGTTGGTCGCGAGGAAGCAGGACCTCACGAAGTACTCAACTGCGCCGAACAAAAACCTTTTA
ACCCAACCGCTGTTGCTGCTTCTTGAGATCATCCTACTTTAGCCCCGCCCATACAATAAACGTTGGGAATCATAATTGCCATTCTAGTTG
TTCTATCATGTAATATTTTTGGACTTGCATTTTTTTTTTTTTATGTTCATGGTTTGATTTATAAATATATATATATATGTAATGTGAAGC
TTCTATGTTGTAATTTGTAAAACTGCAATTCTACTGTCCTGTTGCATTTCATCCCCAAAAAAAAAAAAAAAATACCCATACTTTGATACG
GAGCTATCATTGTTTTGCCGAAAATAACATAATTATAAAGCCTATTTCTGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAATTCGGGGGGGGGGGGGGGGGCCCCCTTTCCCCCTAGGGGGGGGGTTTAAAAATTTTGGGGGGGCTTT
TTTAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (30)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	49
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	4
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	5
Solanum lycopersicum	LA	Leaf Mature leaves	6589	9
Solanum lycopersicum	LB	Leaf Mature leaves	3316	5
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	5
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	8
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	12
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	5
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	7
Solanum lycopersicum	cTSB	seed	1880	5
Solanum lycopersicum	cTSC	seed	2256	3
Solanum lycopersicum	cTSD	seed	1504	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	6
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	4

mRNA member sequences (159)

Alignment image suppressed for unigene with 159 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101487	Glycoside hydrolase family 19 - Molecular Function: chitinase activity (GO:0004568) - Biological Process: chitin catabolism (GO:0006032) - Biological Process: response to pest pathogen or parasite (GO:0009613) - Biological Process: cell wall catabolism (GO:0016998)	104
2	118520	Glycoside hydrolase family 19 - Molecular Function: chitinase activity (GO:0004568) - Biological Process: chitin catabolism (GO:0006032) - Biological Process: response to pest pathogen or parasite (GO:0009613) - Biological Process: cell wall catabolism (GO:0016998)	68
5	129969	Glycoside hydrolase family 19 - Molecular Function: chitinase activity (GO:0004568) - Biological Process: chitin catabolism (GO:0006032) - Biological Process: response to pest pathogen or parasite (GO:0009613) - Biological Process: cell wall catabolism (GO:0016998)	13

Preceding Unigenes (1)

Unigene	Build
SGN-U213405	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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