Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U570245 in the current build, Tomato 200607 #2

Unigene SGN-U312962

Unigene Basic Information

Unigene ID:	SGN-U312962
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	312962
mRNA sequence:	Length: 2646 bp

>SGN-U312962 Tomato 200607 #1 (37 members)
CATCCAAGAATTCGTTCAATTCATCTCTTCTGTTGAGCAGAAGTTCAGAAACTATATATAGGTATTTGGTTCCTGACACATGTAATACCA
GCAGGTCTACAATTTTTCTTTAACACTAAAGGTTAAATATCTACTAGCAATAGCCATTATCTTCTATAAACACAGTCGCTGATAAGTTTA
GCTTTTATTGAAGTAGCTTACATATCATACAATCACTTGATTTCCTATCTAATATGTCTAACAAAACAAAACGAAACAAGATGAAACCGA
GGATAAAAATTATAAAGGTAAACAGAAATCAAGAAACAAAGAAGGTAGTAAAACAAAGTGGAGTAGGTTTATTGGAGAAGTACAGAGGCA
TAAGGAAAAAGAAGTTGCCAAGCTATATGACAGGTGTTTGTGTAACTGTATTCTTGACTAAGGAGAGGGGTTCTTCTTTTGTAGAGATGA
AGAAGTGGAAGCTGGAGGAACACCAGGAAAACCAGGTATGATTGGTGGGAAGAGTGAAGGGGGCGGTGGTGGGGGAGATGGAGTTAAACC
AGGTATGAACGGTGGGATAAGCGGAGGGAATAATGAAGGTGGAGAACGTGGAGGTGAAGGAATTAATGGAGGAAATATTGAAGGTGGAGG
AGAAGGGAATAAGGGAGGAAATATGGAAGGAGGAGGAGATGGGATGATAGGAGGAATAATAGAAGGTGGAGGTAGAAATGGGTTTGGAGG
AAGGATTGAAGGTGGTGGAAGAAGTGGATTTGGAGGCAGGGGAAGTCCTCCTATTGGATTGAAAAAATTTGGCTTAGCTGCAGTTTCTGA
TTGAGAGTAGTATTTGCTAGAGTCTTTAGGCACTGGTGATATTGGAAGTCCTGGAAGATCTGGCAAAGGAGGGAGCAATGGTAAAGGAGG
TAGCCTAGGAAGAGGTGGAAGTAAAGTACCTGGCGCTGGTGGATCTTGAATTGGAGGGTAAAATGTAGGATCATTGGGATTTGAAATAGC
AGACTTTTGAGGATCTGTTAATTTCTTTTTTGACTTTTGGATGCTTGGCTTTTGGCTACAGAGATCTGGCTGGTTGAGAGGCTTGAAAGT
GAAGAAACCAGCAGAGAAGATGTGAGTCCCTTGTGTTCTTGACTTGAGATGAAGGGAAGATGAAGTTGCTGTCGACGCCACAGCACAATA
TGGCTCGCTGCTCTTGATCAGCTTCACAGAACATCCCTTGATTTTCTTGACATGTTTACTTACAGAAATAGGAAGGTCTACACTGAATTT
CCCATGCTCATTGGTTTTCACCTCCTTGTAAAAACTTGATCTTCTGACCGAGTCTGCACATTCTACAGCGACAGTAGCACCTGAAATGAA
GTGACTAGCCCCTGAGAAGTGTTGCTGGAAGCAGGTATCACAGAAAACAGTTCCCTCAATAACTGCGGTTGAGTGATGCCTATGCCTAGT
ATTCTCCCCGAAAAACCCCTTTTCTCCATTTGCATACACCAAACTTTCATTTCAAACGGAGAGAAAAAGGGCTACCTGCGGCTGAAATTT
TCTCAATTCCAATGGGTGAAGGAAAGCAAGGAGCTATGGTGGTTGAAATGCCAAATAGCAGCAATCAGAATCCAATAGTTCAGTTGCAGA
ACAAGTTTAAGGAATTGGAAATCGGCTTCAAAGGGTGGTTATCGAAGCAGTCAATTCCAGTTGAAGCTGCTGTGGTGACAGCAACTAGTG
GACTACAGGGGGCTGCTATTGGTGGATTTATGGGAACGCTTACACAGGATGTGTCTTCCTCTATGCCTATTCCTCCTGCTGGTGCTAATC
TCAATCCCCAAGCTATGGCCTCTTTTCAACAAGCTCAGGCTCTCGCAGGAGGTCCGTTGGTTCAGGCTCGGAATTTTGCTGTTATGACTG
GTGTTAATGCTGGCATATCTTGTGTTTTGAAAAGAATTAGAGGCAAGGAAGATGTGCAGTCCAGTATGGCAGCTGCCTTTGGTTCTGGAG
CTCTGTTTTCACTAGTTAGCGGCATGGGTGGCCCAAATCCAGTACCCAATGCTTTGACATCTGGGATTTTCTTTGCCCTTGTTCAAGGTG
GACTGTTTGAGCTCGGGCGGAAGTTTTCTCAACCACCTGCTGAAGATACGCATTATGTCAGAACGAGATCACTATTGTCAAGCCTTGGCC
TGCAAAATTATGAAAAGAATTTCAAAAAAGGGTTGTTGACAGACACCACTTTGCCTTTACTCACTGATAGTGCTCTTAGAGATGTGAGGA
TCCCTCCTGGGCCAAGACTTCTTATTCTTGATCATATACAAAGGGATCCGGAACTCAGAAAGAAACGAGGATGAACTCACTGCAAAAGAT
GAAGTTTTCCTTTGTCGGAAAGACCTATTCTGTAATTTGAGAAGTAGTGACAGTTTCATGTTATGTTTTTATGATGTTCCAGTGAACTAG
GTTATTATGGAACTTCTTTGAGTGTAAGTTCTTGCCATCAGATAACAAGGCAGACATGCTATTTATCGAGTTTGAGCTAGAAACAAAAAA
AAAGTCCACTATTTTAAAGAAAAAGAAAAATTAGAGTGTCGTTGGGGAAATGAAGCTATAAGGCATAAGCTTTTCCCGTAGATTTCAGCA
AATAGAAACGTGTTTTCTCAGATGAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	5
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	cTSD	seed	1504	1

mRNA member sequences (37)

Alignment image suppressed for unigene with 37 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	122492	Mitochondrial import inner membrane translocase subunit Tim17/22 - Cellular Component: mitochondrial inner membrane (GO:0005743) - Molecular Function: protein transporter activity (GO:0008565) - Biological Process: protein transport (GO:0015031) Sterile alpha motif homology Sterile alpha motif SAM	5
5	132687	Mitochondrial import inner membrane translocase subunit Tim17/22 - Cellular Component: mitochondrial inner membrane (GO:0005743) - Molecular Function: protein transporter activity (GO:0008565) - Biological Process: protein transport (GO:0015031) Sterile alpha motif homology Sterile alpha motif SAM	5

Preceding Unigenes (1)

Unigene	Build
SGN-U215065	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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