Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581255 in the current build, Tomato 200607 #2

Unigene SGN-U313245

Unigene Basic Information

Unigene ID:	SGN-U313245
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313245
mRNA sequence:	Length: 1555 bp

>SGN-U313245 Tomato 200607 #1 (104 members)
TATCCTTAAACCTGATCCGATTGGCCCTTCCCTCCACCTCTCATTCCCTCCTTCTCCCTTCACCCCACACCACCAAAACACCCAAGATTT
CCACCATTCTGATAAGAATCCTCAAAACAAAACCCAATCTTTATCCCTCCCACTTCACTCTTTGGAGCAGCCACATTCCTGAGCTAAAAG
AAAAAACATGTCTTGTTCAAATTTGACAATGTTGGTGTCCTCAAAACCATCTCTTTCTGAATCCTCTGCCCTTTCTTTCCGCTCTGCTGT
CAGCTCTTTTCAGCTTCCTAACCACAACCTATCAGGCCCTTCAAACCCCTCAAGATCATCATCAGTTATCCCTGTCCGATGTGGTCTCCG
TGATCTGCGTGATCGAATTGACTCTGTCAAGAACACACAGAAGATTACTGAGGCTATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGC
ACAAGAAGCTGTTGTGGGTGCGAGGCCTTTCTCTGAGACTTTGGTTGAGGTACTTTACAACATCAATGAGCAGCTCCAGACAGATGACAT
TGATGTACCACTCACCAAAGTAAGACCTGTCAAGAAAGTGGCGTTGGTGGTTGTCACCGGTGACCGGGGTCTTTGTGGTGGTTTTAACAA
CTATATCATCAAAAAAGCTGAGGCCAGGATTAGAGATTTGAAAGCTCTTGGCCTTGATTACACTATTATCAGTGTTGGCAAAAAGGGTAA
TTCTTATTTCCTCCGCAGGCCTTACATCCCTGTAGATAAATTTCTTGAAGGAAGCAATCTGCCCACTGCTAAAGATGCTCAGGCCATTGC
TGATGATGTTTTCTCATTTTTCGTGAGTGAAGAGGTTGACAAGGTTGAGCTTCTCTACACAAAGTTTGTGTCTTTAGTGAAATCTGAGCC
AGTCATTCACACCCTGCTTCCATTGTCACCAAAGGGAGAGATTTGTGACATCAACGGGAACTGTGTTGATGCAGCTGAAGATGAGTTCTT
TAGGTTGACAACAAAGGAAGGGAAATTGACAGTGGAAAGAGATGTCATGAGGACTAAGACAACTGATTTTTCAGCAATCTTGCAATTCGA
GCAGGACCCTGTTCAGATTCTTGATGCCTTGCTGCCACTTTACTTGAACAGTCAAATCCTGAGGGCATTGCAGGAGTCATTAGCCAGTGA
GCTTGCTTCTAGGATGAGTGCCATGAGCAGTGCAACAGATAATGCATCTGAATTGAAGAAGAATCTATCTAGAGTGTACAACAGACAGCG
TCAGGCAAAGATTACCGGAGAAATATTGGAGATTGTTGCTGGAGCAGATGCCTTGGTTTAAGCATATCCCCTGCAATTGTGCTTCTCTGT
AGGTACAATAATGAAGTCTAGACAATTTTTATTTTCTGCTTCTCAACCTCGTACAGACTTTGTGCACAAGAAGAGAACCACATTATATTT
TGTACACAAGGCCAGACCAAACCTATATTTGTATGTCAATTTTTTTCTGCTATATTTGTAAAACATGAATTATTGAAAGCCTGAAATCTT
CAATCCCTAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (24)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	24
Solanum lycopersicum	LB	Leaf Mature leaves	3316	4
Solanum lycopersicum	LC	Leaf Mature leaves	5712	9
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	4
Solanum lycopersicum	cLER	leaf 4 weeks	5127	10
Solanum lycopersicum	cLES	leaf 4 weeks	5243	6
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	8
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	4

mRNA member sequences (104)

Alignment image suppressed for unigene with 104 aligned sequences.
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Markers Information (0)

Expression Data (1)

Annotations (manual: 2 | blast: 2 | go: 6 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102232	ATPase F1 complex gamma subunit - Biological Process: ATP synthesis coupled proton transport (GO:0015986) - Cellular Component: membrane (GO:0016020) - Cellular Component: proton-transporting two-sector ATPase complex (GO:0016469) - Molecular Function: hydrogen-transporting ATP synthase activity rotational mechanism (GO:0046933) - Molecular Function: hydrogen-transporting ATPase activity rotational mechanism (GO:0046961)	18
2	120299	ATPase F1 complex gamma subunit - Biological Process: ATP synthesis coupled proton transport (GO:0015986) - Cellular Component: membrane (GO:0016020) - Cellular Component: proton-transporting two-sector ATPase complex (GO:0016469) - Molecular Function: hydrogen-transporting ATP synthase activity rotational mechanism (GO:0046933) - Molecular Function: hydrogen-transporting ATPase activity rotational mechanism (GO:0046961)	9
5	130585	ATPase F1 complex gamma subunit - Biological Process: ATP synthesis coupled proton transport (GO:0015986) - Cellular Component: membrane (GO:0016020) - Cellular Component: proton-transporting two-sector ATPase complex (GO:0016469) - Molecular Function: hydrogen-transporting ATP synthase activity rotational mechanism (GO:0046933) - Molecular Function: hydrogen-transporting ATPase activity rotational mechanism (GO:0046961)	9

Preceding Unigenes (1)

Unigene	Build
SGN-U213737	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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