Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U580658 and SGN-U590634 in the current build, Tomato 200607 #2

Unigene SGN-U313338

Unigene Basic Information

Unigene ID:	SGN-U313338
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313338
mRNA sequence:	Length: 1830 bp

>SGN-U313338 Tomato 200607 #1 (85 members)
TACGGGATGCCTAAGGCTAAACTCCATCTATGACAACTAAATTAAAATACTAATTACCAATTTTTTAACTAAAAGACAGAAATTGAACCA
AACGAGAAAAGCATGTGGTGAAGGATAAATTGCGCTCACCATTTAGTTAACTTCACTTCACCCATTTTGCTACGACAAACGCAATTCGCT
CACGTGCGCGCTCTCCTCCTTCCATGGCTATTCCTCTTCAATTCTCTAGTATATCCACTCGCACAGATCTCTCCTTGCCGGAGACTAGAA
CTTTCAGGTTACCGAAACCTTTCTCCGTCATCAGATGCTCCGCCGGCGAACCTGTTCCTTCCTCGTCGGCTACTGCTGAGTCAGAGTTCG
ATGCTAAGGTTTTCCGGAAGAATCTGACCAGAAGTGCTAATTACAATCGTAAAGGTTTTGGACACAAAGAAGCTACTCTTGAACTCATGA
ATCGCGAATATACCAGTGATATCATCAAGAAATTGAAGGAGAATGAATTTGAGTATACATGGGGAAACGTAACCGTAAAACTTGCAGAGT
CCTATGGTTTCTGTTGGGGGGTTGAGCGTGCAGTTCAGATTGCTTATGAAGCGAGGAAACAGTTTCCAACAGAGAGGATTTGGATAACTA
ATGAAATTATTCACAACCCCACTGTGAATAAGAGGCTAGAGGATATGGATGTTAAGAACATTCCACTTGAGGAAGGGAAGAAAAACTTTG
ATGTTGTTGACAAGGATGATGTTGTGGTTTTGCCTGCTTTTGGGGCTGCTGTTGATGAAATGTTGGTTTTGAGTGATAAAAACGTACAAA
TTGTTGATACAACCTGCCCGTGGGTGACTAAGGTTTGGAACACGGTTGAAAAGCACAAGAAGGGAGAATATACCTCCATTATCCATGGTA
AATATGCTCATGAGGAAACTGTTGCGACTGCATCCTTTGCTGGGAAATACATCATTGTGAAGAACATGGCAGAGGCAACTTATGTCTGTG
ATTATATTCTTGGAGGTAAACTTGATGGTTCTAGCTCAACCAAAGAGGCATTTATGCAGAAATTTAAATATGCAGTTTCTGAAGGGTTTG
ATCCGGATGTTGACCTTGTAAAAGCTGGTATTGCAAACCAAACAACTATGTTGAAGGGAGAAACAGAAGATATTGGGAAGTTGGTCGAGA
GGACCATGATGCAAAAATATGGGGTGGAAAATGTTAACAACCACTTCGTAAGTTTCAACACTATATGCGATGCCACACAAGAGCGTCAAG
ATGCAATGTATAAGCTGGTTGAGCAAAAGCTGGATCTTATGTTAGTGATTGGTGGCTGGAACTCAAGTAACACTTCACATCTACAGGAGA
TTGCAGAGGAACGTGGAATTCCCTCATACTGGATTGACAGTGAACAGAGAGTAGGTCCTGGAAACAAAATAAGTTACAAGTTAATGCATG
GTGAGTTGGTTGAGAAAGAGAACTTCTTACCGGAGGGTCCTATTACAGTTGGGGTGACATCTGGTGCATCCACCCCCGATAAGGTTGTTG
AAGATGTCCTTATCAAGGTGTTTGATATCAAGCGCGAGGAAGCCTTACAATTGGCCTAAACAAGATTGGAACTCTTTTAAGATAATAGGA
GTGCTGCAATTTGGTTCCACCCCCCAAAAAAACTGTAGGCTATGCTGTATGTGCTAGCTCAACTATGCTAAATAACATGTTCTTGTAGAT
GTACAACTCAGTTTTTATAATATTATTATAAATAAAAAAAAAAAAAAAAACTGTCCAGCTCTCAAACCTTGCCAGAATCAATGTCAATTT
GCCAGTGAGTCCGATACAGTAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (24)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	6
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	8
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	8
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	12
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	6
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	4
Solanum lycopersicum	cLES	leaf 4 weeks	5243	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	6
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	5
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (85)

Alignment image suppressed for unigene with 85 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	103133	LytB protein - Biological Process: isopentenyl diphosphate biosynthesis mevalonate-independent pathway (GO:0019288)	8
2	121249	LytB protein - Biological Process: isopentenyl diphosphate biosynthesis mevalonate-independent pathway (GO:0019288)	7
5	131487	LytB protein - Biological Process: isopentenyl diphosphate biosynthesis mevalonate-independent pathway (GO:0019288)	7

Preceding Unigenes (1)

Unigene	Build
SGN-U213466	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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