Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U580107 in the current build, Tomato 200607 #2

Unigene SGN-U313364

Unigene Basic Information

Unigene ID:	SGN-U313364
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313364
mRNA sequence:	Length: 1992 bp

>SGN-U313364 Tomato 200607 #1 (34 members)
GAGGGCAATATTCTGTACTTCCATTTCTTCTTCACATCCAAATACTGATCTGATCCAAAAGAATCAAAGGTTTTTCCTGGGATTCTTTAA
CAAGAGAGAATTACAGAAATGGGTCGTGGAGTCAGCTATGGAGGAGGGCAAAGTTCACTGGGATACTTATTTGGAAACGGTGAGGCGCCA
AAACCAACCACGGGAAATGCCCCAGCTGTTCAAAGTGAAGGGCAGGCAATAAATAAGGAGCCAGCTTCAAAGCCTACCGTTTCCGCTACA
GTTGATGCTACTAAGCAGATTCCTGCTGGTATTCAGAGCACTGCTTCAAGAAACCATTTTGGGGGAGATGGTCAAAACACAGGCAACTTT
ATCACGGACCGGCCATCTACCAAAGTCCATGCTGCTCCTGGAGGTGGATCTTCTTTGGGTTATCTCTTCGGCGGTGGCAGCAACTAAGCA
ATTCTCCAATATACAGTTGGATAATTGTTTTATCACTTCTTTACCTTTTGTCTATCAACACTATGTTGTAATTGTAATTGTGAGTACTTC
AGGTTGTTGTGAAGGGTTAGTTGCATAAGGCTTTGGTCCAAAGTCCCAGTTGACACCCATGAAACTAAAGTTACTTTCAATGTAATATGC
CAACCTTTGTTAATTGATCATTTTGATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAGATGAGAAAAAAAGCAAC
ACGCTCAAATTGTATTTTCACGCATCTCAAAAGTCTCAACTGATTTCAATGATTAGTCCACTTCTTCCATCTTGCTTTCCTCACCAACAT
CCTCCAGAGGAGGCATATCATCAACATCCACACCAGCTTCCTCTTCTTCGTCAATGCTCAAACCCAACTTCAGCATTCTATGAATTCTTG
CAGCAAATGTATTCGGGTCATCAAGACTAAAACCAGATGTTAGCAAAGCTGTCTCAAACAGCAGCAGCACAAGATCTTTCACCGACTTGT
CATTCTTGTCAACTTCAGCTCTCTTCCTCAACTCCTCCACAATGCCATTATCAGGGTTGATTTCCATTGTCTTCTCGCTAGACATGTAAG
AGCTCATGCTATTGTCCTTCAAAGCTTGAGCTTTCATGATCCTTTCCATGTTAGCTGTCCAACCATACTCACCTGTCACTAAGCAACATG
GAGAATCAACAATCCTATCAGAGACTACAACCTTCTCAACTTTGTCTCCAAGAATGTCCTTGATGACCTTGCAAAGGCTCTCAAAGGATT
GTTTTTTCTCTTCCTTTTTCTTCTTTTCTTCTTCGCTCTCGTCATCGAGCTTCAGTCCCTCCTTTGTAACAGAAACCAGTTTCTTACCAT
CATATTCCTTCAGTTGCCCAATAGCATATTCATCAATGGCATCAACCATGAAGAGTACTTCATATCCTTTCTTCTTTAGGCGTTCCAAGA
ATGGTGAATTTTCAACTGCCTTTTTGCTCTCTCCAGTGATGTAGTAGATGTCTTTCTGAACCTCCTTCATCCTGGTTACATAATCTTTCA
AACTTGTCAGCTCATCACACTCTTGGGTTGACTGATATCGAAGGAAGTCAGCCAACTTAGCCCTGTTCTGGCTATCTTCATGAATGCCCA
GCTTCAAGTTCTTTGAGAAAGCCTCGTAGAACTTGTTGTAGTCCTCCTTGTTCTCTGCAATCTCATTGAACATCTCAATACATTTCTTCA
CGAGGTTCTTCCTAATGACCTTGAGAATCTTGTTCTGCTGCAGCATTTCACGGGAGATATTGAGGGGCAAATCATCAGAGTCAACAACAC
CCTTCACGAATCCAAGGTACTCAGGGATAAGTTCCTCACAGTTGTCCATGATGAACACCCTCCTGACATAAAGTTTGATGTTGTTCATCT
TCTTGCGGGTGTCAAATAGATCAAATGGAGCCCTCTTAGGTACAAAGAGGATTGCCTTGAATTCAAGTTGCCCCTCAACAGAGAAGTGTT
TGACTGCAAGGT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
hsp90	heat shock protein 90

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	4
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	2

mRNA member sequences (34)

Alignment image suppressed for unigene with 34 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101540	Heat shock protein Hsp90 - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Four-helical cytokine	81
2	118502	Heat shock protein Hsp90 - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Four-helical cytokine	77
5	128990	Heat shock protein Hsp90 - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Four-helical cytokine	76

Preceding Unigenes (1)

Unigene	Build
SGN-U215089	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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