Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579115 and SGN-U579238 in the current build, Tomato 200607 #2

Unigene SGN-U313488

Unigene Basic Information

Unigene ID:	SGN-U313488
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313488
mRNA sequence:	Length: 1438 bp

>SGN-U313488 Tomato 200607 #1 (66 members)
AATCGGCCGAATTGAAAACTAAAATACATTTTCTCTTCAAATTGAGCTTTTTCTCCATTAAAATTCTCTCTGCAAATTTATAGTTTTTCT
TTTTTCACTTTTTGAGAAGAAATCAAAAGCTATGTGTGGTGGTGCAATTATCTCCGATTTGGTACCTCCTAGCCGGATTTCTCGCCGGTT
AACCGCTGATTTTCTATGGGGTACATCCGATCTGAACAAGAAGAAGAAGAACCCTAGTAATTACCACTCAAAGCCCTTGAGGTCTAAGTT
TATTGACCTTGAAGATGAATTTGAAGCTGACTTTCAGCACTTCAAGGATAATTCTGATGATGATGATGATGTGAAGGCATTTGGCCCCAA
ATCCGTGAGATCTGGTGATTCAAACTGCGAAGCTGACAGATCCTCCAAGAGAAAGAGGAAGAATCAGTACCGGGGGATCAGACAGCGTCC
TTGGGGTAAGTGGGCAGCTGAAATACGTGATCCAAGGAAAGGTATTCGAGTCTGGCTTGGTACTTTCAATTCAGCCGAAGAGGCAGCCAG
AGCTTATGATGCTGAGGCGCGAAGGATCAGAGGCAAGAAAGCTAAGGTGAACTTTCCTGATGAAGCTCCAGTGTCTGTTTCAAGACGTGC
TATTAAGCAAAATCCCCAAAAGGCACTTCGTGAGGAAACCCTGAACACAGTTCAGCCCAACATGACTTATATTAGTAACTTGGATGGTGG
ATCTGATGATTCGTTCAGTTTTTTCGAAGAGAAACCAGCAACCAAGCAGTACGGCTTCGAGAATGTGTCTTTTACTGCTGTAGATATGGG
ACTGGGCTCAGTTTCCCCTTCAGCTGGTACAAATGTTTACTTCAGCTCTGATGAAGCAAGTAACACTTTTGACTGCTCTGATTTCGGTTG
GGCTGAACCGTGTGCAAGGACTCCAGAGATCTCATCTGTTCTGTCGGAAGTTCTGGAAACCAATGAGACTCATTTTGATGATGATTCCAG
ACCAGAGAAAAAACTGAAGTCCTGTTCCAGCACTTCATTGACAGTTGACGGTAACACTGTGAACACGCTATCTGAAGAGCTATCGGCTTT
TGAATCCCAGATGAAGTTCTTGCAGATCCCATATCTCGAGGGAAATTGGGATGCATCGGTTGATGCCTTCCTCAATACAAGTGCAATTCA
GGATGGTGGAAACGCCATGGACCTTTGGTCCTTCGATGATGTACCTTCTTTAATGGGAGGTGCCTACTAAGCTGCATACACATCTTCCCT
TGCTAAGTTTTGTAAATAACGCTTCATTTGAGTGAAGTTTGCGCCTGCGTTTACGTTTATCACCAAACTAAAAGACTATATATGTGTTGT
ATTAATTTATTCAAAATTTACTCGTTTGATATATGTAAGTATGTATCCTTGTTTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Sl-ERF_A_3	Ethylene Response Factor A.3	transcriptional regulator

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	13
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	3
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	14
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	5
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	5
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (66)

Alignment image suppressed for unigene with 66 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 2 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101383	Pathogenesis-related transcriptional factor and ERF - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355)	404
2	118417	Pathogenesis-related transcriptional factor and ERF - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355)	283
5	128933	Pathogenesis-related transcriptional factor and ERF - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355)	228

Preceding Unigenes (1)

Unigene	Build
SGN-U213644	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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