Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U581481 in the current build, Tomato 200607 #2

Unigene SGN-U313528

Unigene Basic Information

Unigene ID:	SGN-U313528
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313528
mRNA sequence:	Length: 1309 bp

>SGN-U313528 Tomato 200607 #1 (79 members)
GGTAAAGCTCTAAGGTATCTAAATTTGGAGTACCTAAGCAAATCCTAAAGTTAAAACAATGAATCCCTAAAGAAGATAGGAAGAAATGCC
ATAGATAAAAACAACCCATGTTCACTTTTTCTCTCTCTAAACATTGAAATTCAACCAAAACAAAAAACAAAAGTTGATAAGAATCCTTTC
TTTCTTTCTTTGTGTGTGTGTGTGTCTAGCTAGGGTTTGCATTTCTTTCACAATTTTGGTTGTTTCAGTAGGAGAGAAAAGAGGATCTAA
GAGTTAGCCAAGAGAAGAAATTAGTGAGAAAATAAAGTAGAAAAAGATCATCAGAGGAAGGAGGGATGGGTAGAGGAAGAGTTGAGCTGA
AGAGGATAGAAAACAAGATAAATAGACAAGTCACTTTTGCAAAGAGGAGAAATGGATTGCTCAAAAAAGCTTATGAACTATCTGTGCTTT
GTGATGCTGAAGTTGCTCTACTCGTTTTCTCTAATCGTGGAAAACTCTATGAATTCTGCAGCACAAACAATATGCTCAAAACACTTGATA
GGTACCAAAAGTGCAGCTATGGAACATTGGAAGTCAATCGATCAATCAAAGATAATGAGCAAAGCAGCTATAGGGAATACTTGAAACTCA
AAGCCAAATATGAGTCGCTGCAGCGATATCAAAGACACCTTCTTGGAGATGAGTTGGGGCCTCTGACTATAGATGATCTTGAGCATCTTG
AAGTCCAACTAGATACTTCCCTCAAACACATTAGGTCCACCAGGACACAAATGATGCTTGATCAGCTTTCTGATCTTCAAACTAAGGAGA
AATTGTGGAATGAGGCTAACAAGGTTCTTGAAAGAAAGATGGAAGAAATATATGCTGAAAACAACATGCAACAAGCATGGGGTGGTGGTG
AGCAAAGTCTCAATTATGGTCAGCAGCAACATCCTCAATCTCAGGGTTTCTTCCAACCTCTAGAGTGCAACTCTTCCTTGCAAATTGGGT
ACGATCCAATAACAACTTCAAGCCAAATAACAGCAGTAACAAATGCCCAAAACGTGAATGGTATGATACCTGGTTGGATGCTGTGAATGA
AAAAGTCCTTTATCTTCAGCTTTGCATAAAAGCATATGAAGTATATTTCTATAATAATAAAGGAAAACTCCAGTACCTTTATTTTCAGCA
AAATACCCTAATTAAGGTGAACGTTGTGAACCATTTTCTTTGCATAAAAACAAACTTGTTTGCTTGGAAATGTTTTATTTTATTCAAATC
ATAATGTGGATGTTGCTGAATATGATGATTATTAGCATCTTTCATGTGA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
TM29	TM29	transcription factor

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	13
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	18
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	11
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	8
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	4
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	4
Solanum lycopersicum	cTSD	seed	1504	2
Solanum lycopersicum	vSlycmRNA		8362	3

mRNA member sequences (79)

Alignment image suppressed for unigene with 79 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 5 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101412	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	242
2	118437	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	170
5	128950	Transcription factor MADS-box - Molecular Function: transcription factor activity (GO:0003700) - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565)	149

Preceding Unigenes (1)

Unigene	Build
SGN-U213617	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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