Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U569740 and SGN-U569743 in the current build, Tomato 200607 #2

Unigene SGN-U313620

Unigene Basic Information

Unigene ID:	SGN-U313620
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313620
mRNA sequence:	Length: 1569 bp

>SGN-U313620 Tomato 200607 #1 (50 members)
ATCGGCCGAATTGAGGGTTTTTAAGCTTTCGTTTCACTTCAGTCCTTCAATTATCAGCCGCTTTGGTTAGGTTTTCATAACACCCACAAA
TTTGTTTCTCTTCAAATTTACCCATAAATTCATCTTTACATGGATTTTAATCTGTAGAGTTTTCGTTGATTTCTTGAAAAAAAATCGGTT
CTTTGCATCACCCTCTCTCTATATCTGTTTAGGAACTCCGAGAAGAGTGAAAAAGAATGGCTACTTTGAACCCATTCGACCTTTTGGATG
ATGATGCTGAGGACCCAAGTTTGCTAGTTGCTGCTCAGCAGCTAAAGGCTCCTGTTGCATCTGCACCAGCCAAGAAGGGTCCAGTTCAGC
CTGCTAAGCCTGCTGCTAAGTTGCCCTCCAAGCCGGTTCCTCCTTCACAGGCTGTGAGGGAAGCCAGGAGTGATGGCCAGAGAGGAGGAG
GCCGCGGGGGTCCACGTGGAGGGGGCCGTGGTCGTGGACGTGGACGTGGGTTTAACCAAGACTTTGCTGCTGATGAGAATGCTTTTGGCA
GCAATAATGGATTCTCTGGGAGGTACAGTGCTCCAGAAAATGGAGAATCAGGAAAGGTCTCTGAAAGGAGAGGTGGATACGGTGGATCTC
GTGGGGGCTTTTATGGAGGTCGTCGTGGTGGTTTCAATAATGGGGATGCTGCAGATGGAGAAATTGAACGCCCAAGGAAAGTGTTCGATC
GACGAAGTGGCACTGGCCGTGGGAATGAGTATATTAAACGGGAGGGCTCTGGTCGTGGGAATTGGGGAACTACTGCAGATGATATTGCAC
CGGAGACTGAAGTACCTGTTGTTGATGGTGAGAAGATTGTTGAGGCTGAGAAACAAACTGGGCAGGAAGATGCTGGAGATGACAACAAGG
ATTCTACTGCTGCTGAGCTAGAAGAGAAGGAACCTGAGGAGAAGGAGATGACCCTCGAGGAGTATGAGAAGGTAATGGAGGAGAAGAGGA
AGGCTTTGGTGGCTCTAAAGCAGGAGGAAAGAAAGGTTAATTTGGACAAAGAACTTCAATCCATGCAACTTCTCTCAAACAAGAAGAATG
ATGATGAGATCTTCATCAAATTGGGTGCTGAAAAAGATAAGAAAAAGGAGGCAGTGGAAAAAGCCAAAAAGGCCCAAAGCATAAATGAGT
TTCTAAAGCCTGCTGAGGGTGAAAGTTACTACCGCCCTGGTGGCCGTGGTAGGGGCCGCGGCCGCGGAAGAGGTAATGGTGGTGGATATG
GTGGAATCAGCAGTGTTTCAGCCCCATCCATTGAAGATGTTGGTCAATTCCCCTCCTTGGCTGTCAAGAAAGGGAGGCAGTCCTGCATGG
ATTAGGATTATGTTGATCAGCCTGGGCTAAAAGTTGGATGCCAGTTTTGTAACATTTTTGGTTATTTTTTTTTTCTTTCTGATTTCAGTC
ATTGTTGAACATGGTGTAATATCATCATCTTATGAGAACTTGAAGAGTAGATGATATATTATGTTACAAGAATGATTCACTTAATATTAT
CTGGTAACAATTTCAATATTATATAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	6
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	8
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	3
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSC	seed	2256	3
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1

mRNA member sequences (50)

Alignment image suppressed for unigene with 50 aligned sequences.
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Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101362	RNA-binding region RNP-1 (RNA recognition motif) - Molecular Function: nucleic acid binding (GO:0003676)	1383
2	118794	Hyaluronan/mRNA binding protein	30
5	129226	Hyaluronan/mRNA binding protein	30

Preceding Unigenes (1)

Unigene	Build
SGN-U213851	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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