Sol Genomics Network

Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U578228 and SGN-U579550 in the current build, Tomato 200607 #2

Unigene SGN-U313664

Unigene Basic Information

Unigene ID:	SGN-U313664
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	313664
mRNA sequence:	Length: 1599 bp

>SGN-U313664 Tomato 200607 #1 (68 members)
AGATAAAAAGGCCTTGTCATTTTATCAGTTGGTATGAGTAATAAACTCTTATAAGCTCTCAGATTTATCTTTTCAAGAATACAAAAAGAT
TCAATCTTTTTGAAAGGTGACTATTTGGAAAGATGAGGGGAGGATTGTGGCAACTTGGACAATCGATCACCAGACGTCTGGCTCAGGCTG
ATAAGAAGACTATTGGTCGTAGATGCTTTGCTTCAGATGCTGATCTGAAGAAGACTGTTCTGTATGACTTCCATGTTGTCAATGGGGGAA
AGATGGTGCCTTTCGCTGGTTGGAGTATGCCTATCCAGTATAAGGACTCAATTATGGACTCAACAGTAAATTGTAGGGAGAATGGTAGTC
TCTTTGATGTTTCTCATATGTGTGGGCTAAGCCTCAAGGGGAAAGATACTATCCCTTTCCTGGAAAAGCTTGTTGTTGCTGATGTTGCTG
GGCTTGCTCCTGGGACTGGTAGTCTCACAGTCTTCACAAATGAGAAGGGAGGTGCAATTGATGATTCAGTGGTCACCAAGGTGACTGATG
ATCACATCTACCTTGTTGTAAATGCGGGTTGCAGGGACAAGGATCTTGCACACATTGAGGAGCACATGAAATCATTCAAGTCAAAAGGCG
GTGATGTTTCATGGCACATCCATGATGAGAGATCGCTTTTAGCCCTTCAGGGACCCCTTGCTGCTCCAGTTCTTCAATATCTGACAAAAG
ATGATTTGAGCAAGATGTACTTTGGGGAATTCAGGGTTTTGGATATCAATGGGGCACCATGCTTCCTCACAAGGACAGGGTATACTGGTG
AAGATGGATTTGAAATTTCAGTACCTTCAGAAAATGCTCTTGATCTTGCAAAAGCTCTTCTTGAGAAATCAGAAGGGAAGATTCGGTTAA
CAGGTTTAGGAGCTCGTGACAGTCTTCGTCTTGAGGCTGGATTGTGCTTATATGGTAATGACATGGAGCAGCACACAACACCTGTAGAGG
CAGGGCTTACATGGGCCATAGGGAAGAGAAGAAGGGCAGAAGGAGGCTTCCTTGGTGCTGAGGTAATACTAAAGCAAATTGAAGAAGGTC
CTAAAATCAGGCGAGTTGGCTTTTTCTCTTCAGGCCCACCCCCTAGAAGTCACAGTGAAATTCAAGATTCAAATGGACAAAATATTGGAG
AAATCACCAGTGGTGGTTTCAGCCCTTGTCTGAAGAAGAACATAGCAATGGGATACGTAAAAACGGGTAACCACAAGACAGGGACTAATG
TCAAGATTGTGATTCGAGGAAAGTCTTATGATGGGGTGGTTACCAAGATGCCTTTTGTACCCACCAAGTACTACAAGCCATAATAACTCT
ATGTTGCCTCTTAAAAACTTGTTGATGCCTCTAATTTCTACCTTGTTCTTACTGTTTTTAGTGAAAGTATAACCGGAATACTTCAATCTA
CATGTTGCTGTTTTTTGCTTAAAAAAAAAAAAAAAAAAAAAGTTCCTTTCTTGCTTTCTTGCATGATATGTGTATTTTCACTTTTGCATT
CCTCTGGCATGATCACAGTAACCGTAGTGTAGTGTGTAACAAAAAAGAAAAAGAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	5
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	2
Solanum lycopersicum	LA	Leaf Mature leaves	6589	12
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	LE15	Fruit 15 days post anthesis	269	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	7
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	11
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	4

mRNA member sequences (68)

Alignment image suppressed for unigene with 68 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102475	Glycine cleavage T protein (aminomethyl transferase) - Molecular Function: aminomethyltransferase activity (GO:0004047) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: glycine catabolism (GO:0006546)	13
2	120288	Glycine cleavage T protein (aminomethyl transferase) - Molecular Function: aminomethyltransferase activity (GO:0004047) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: glycine catabolism (GO:0006546) Glycine cleavage system T protein - Molecular Function: aminomethyltransferase activity (GO:0004047) - Biological Process: glycine catabolism (GO:0006546)	9
5	130573	Glycine cleavage T protein (aminomethyl transferase) - Molecular Function: aminomethyltransferase activity (GO:0004047) - Cellular Component: cytoplasm (GO:0005737) - Biological Process: glycine catabolism (GO:0006546) Glycine cleavage system T protein - Molecular Function: aminomethyltransferase activity (GO:0004047) - Biological Process: glycine catabolism (GO:0006546)	9

Preceding Unigenes (1)

Unigene	Build
SGN-U213912	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: