Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U579730, SGN-U580139, and SGN-U592017 in the current build, Tomato 200607 #2

Unigene SGN-U314285

Unigene Basic Information

Unigene ID:	SGN-U314285
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314285
mRNA sequence:	Length: 868 bp

>SGN-U314285 Tomato 200607 #1 (418 members)
TACACCAATACCATCTGCAGCTACTAAGGGCGATTGGCGGCCCAATCGGCCGAATTGCTCGCTTATGTAACCCTAAGTTCGCCGGAGAAA
GAGAGTCGAAGCTACAGAATTTCAGTTCGCCGCTGCGGAAGCTCCATAGCCAAACTCCTTCCGCCGCAGCGTTCTTATTCAGAAATTCTC
TTGCTCCGACTCCGATCTCGATATCATAATAAGCAATGGCTCGTTCTTTCTCTAACTCTAAGACTCTCTCTGCTTTCGTCTCCGACTCCG
TTTCTGCTTTTCTCAGCAGGCGTGGATATGCAGCGGCATCACAAGGTGCAGTTTCCGGTGTAGCAAAAGGAGTGCCAAGGAGCAACGTGA
TGATGCAAAAAAGTGGAGAGGAATCGGTGAAGACTTCATGGGTGCCAGATCCAGTTACCGGTTACTATAGGCCGGAAGGACAAGCAAATG
AGATTGACGCTGCTGAGCTCCGGAAGATGCTGTTGAAACACAGATCTGGAAGCAACTGAAAATCTTTGAAGCTGCGCCGTTGATCTGCGG
TTAATCATCGGAGATTTTCGATCAACGAGAAAAGAGAATTTAGTGAAGGAACTGTTTTATCAGAAAAATATAGCAGTGTGAAATTTACTC
GTGCTTTGTTGCTTTTAAATTTTAAGCTTATTGTTATATCTTTCTTTTATTAGTATCTTTTATTCATGCAAATGAAATAATTATAGTATT
AGTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCGGGGGGGGGGGCGG
GGACCCTTTTCCCCCAAAAAAGGGGGGGGAAAACGGGGAAAAAAGGTTTTCCGGGGGA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
tfhs1	Solanum lycopersicum heat shock protein

Genomic locations (0)

None

Library representation (28)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	3
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	11
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	110
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	124
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	17
Solanum lycopersicum	LC	Leaf Mature leaves	5712	3
Solanum lycopersicum	LE12	Fruit 12 days post anthesis	276	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	15
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	7
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	60
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	4
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	7
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	20
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	5
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	4
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	3

mRNA member sequences (418)

Alignment image suppressed for unigene with 418 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (13)

Annotations (manual: 2 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101763	Late embryogenesis abundant protein 3 - Biological Process: response to stress (GO:0006950)	39
2	118688	Late embryogenesis abundant protein 3 - Biological Process: response to stress (GO:0006950)	35
5	129161	Late embryogenesis abundant protein 3 - Biological Process: response to stress (GO:0006950)	34

Preceding Unigenes (2)

Unigene	Build
SGN-U212930	Lycopersicon Combined #3
SGN-U212931	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: