Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U576567, SGN-U576569, SGN-U580253, and SGN-U592222 in the current build, Tomato 200607 #2

Unigene SGN-U314386

Unigene Basic Information

Unigene ID:	SGN-U314386
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314386
mRNA sequence:	Length: 2394 bp

>SGN-U314386 Tomato 200607 #1 (74 members)
AATTGCATTATCTTGGAAGGGGCCTGCTCCAGATGCACAAAATGGAGCTTTAGAGAATCATCAGAGCACAATTGTTTTTCCCAAAGGGAA
TCCGATACCCAGTGTGAAAGCTCTGACATTCTACAGATCTGGCACATTTACAATAGATGTACAGTATGCTGATGTCAGTGAACTGCAGGC
GCCAGCAAAAATCAGTACTTACACGATTGGACCATTCCAATCTACGAAGGGTGAAAGGGCTAAACTAAAAGTCAAAGTACGCCTAAACCT
GCATGGTATCGTCTCTGTTGAGTCTGCAACACTTTTGGAAGAAGAAGAGGTGGAAGTCCCAGTTGTGAAAGAGACAGCTAAGGAACCTGC
CAAAATGGAAACAGATGAATCTTCAGTTAATGCTGCTCCTTCAACTACAGCAGAAAGTGATGTAAATATGCAGGATGCTAAAGGAGCTGC
AGCTGCTTCAGGGGCTGAGAATGGTGTTCCAGAATCTGGAGATGAACCTGTCCAAATGGAGTCAGATGCTAAGGTTGAAGCCCCTAAGAA
GAAGGTCAAGAAGACATCTGTACCAGTGACTGAAATTGTTTATGGTGCAATGGCAGCTGCTGATGTTCAGAAGGCTGTTGAGAAAGAATT
TGAAATGGCTCTTCAGGACCGTGTTATGGAGGAGACAAAGGACAAAAAGAATGCTGTTGAGTCCTATGTTTACGACATGAGGAATAAGCT
TTCAGATAAATATCAAGAGTTTGTAACTGATTCAGAAAGAGAACAATTTATGGCTGTACTTCAAGAAGTGGAAGATTGGTTGTATGAAGA
TGGAGAGGATGAAACTAAGGGTGTTTACATTGCCAAGCTTGAGGAGCTTAAAAAGCAAGGTGACCCGATTGAGCAACGATATAAGGAGTA
CACTGAGAGGGGTCCTGTGATTGATCAATTTATTTATTGCATAAATAGTTACAGAGAGGCGGCAGTGTCAAGTGATCCGAAGTTTGATCA
CATTGATTTAGCAGATAAGCAGAAGGTTTTGAATGAGTGTGTCGAAGCCGAGGCTTGGTTTAGAGAGAAAAAGCAGCAGCAGGATGCTCT
TCCAAAATATGCCAACCCTGTTCTATTGTCAGCTGATGTTCGAAAGAAGGCAGAGGCACTTGATAGGGTCTGTAGGCCTATAATGACAAA
GCCTAAGCCAGCTAAGCCAGCAACTCCCGAGACACCACCACCTCAATCTCCTCAAGGAGGTGAGCAACAACCTCCGAGTGCAGAGAGTCC
TGATGCAGGAAATGCAACTGAGGGTGCCAGTGTTGGCAGTGAAGTACCACTTGCTGCTGAGCCAATGGAGACTGACAAATCTGAGACTGC
ACCAAGTGCGTCATGAGTTAAGTTGATGGTTTGATCTTCAAAGAGCTTATGAAGGCACAGACCTGGGTTCGTTTTGTATTACTTTTGTCA
TTTTACCCTAGACTTTTTAAAGGATCTATAGTAGCAATCAACATTTTGTCGTTAGATTGGTGTGATCAATTTCGTCTGGCCATGTCCGTT
CAGGCTATATTATTGTTAATGATACTCTAAAATCCTGGCTTTCAGGGATTTTGTTTCAATGTGAAATTCAATTGCTGTTCTTTCTCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTCTCAAACCAAAACACATTTCATCATACTATACTCTTTACTATAATATTATC
CTCTCTATTTTTCATTATCATTAACAATATGGAAATGGTTAGCAAAATTGCATGCTTTGTTCTTTTGTGCATGGTAGTGGTTGCACCCCA
TGCAGAGGCATTAACTTGTGGTCAAGTTACTGCTGGCTTGGCTCCTTGCCTCCCTTATCTTCAAGGCCGTGGCCCTCTAGGAGGCTGTTG
TGGTGGTGTTAAGAATCTGTTGGGTTCAGCCAAGACTACCGCGGATCGAAAGACAGCATGCACTTGCTTGAAATCAGCTGCTAATGCTAT
AAAGGGAATTGATTTGAACAAAGCTGCTGGTATTCCTAGTGTTTGTAAAGTTAACATTCCTTACAAGATCAGCCCCTCCACTGACTGCTC
CACGGTTCAGTAAAGTTGATCATCAGAATATGGAACCATTTGAGGAGAAGTTATAAGAATAAGATGAATGGAGTGTGATCCTGCTTATGG
ATCCATTAGTTATATGTTGTGTTTGTTGTCTTTTTGTTTCTTTTTTCGTTTTGTCTTTTGGGGGTCTTGTATCGAAACTTCACTATCGAT
GGATTGTATTACTTTAATCCAATCTTGATAATATATATCTATCTTTTTTAGTAAAAAAAATATGTACTCAATATACTTTCCTTTCTCTCT
ATTCTCTTTTCCTATTTTGTAATAGATTTTCGATATATGTGTTGCAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
tsw12	LETSW12

Genomic locations (0)

None

Library representation (25)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	8
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	LC	Leaf Mature leaves	5712	4
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	18
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	4
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTSB	seed	1880	1
Solanum lycopersicum	cTSD	seed	1504	3
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	4
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (74)

Alignment image suppressed for unigene with 74 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 3 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101444	Heat shock protein Hsp70 - Molecular Function: ATP binding (GO:0005524) Heat shock protein 70	154
2	118449	Heat shock protein Hsp70 - Molecular Function: ATP binding (GO:0005524) Heat shock protein 70	129
5	129638	Heat shock protein Hsp70 - Molecular Function: ATP binding (GO:0005524) Heat shock protein 70	17

Preceding Unigenes (4)

Unigene	Build
SGN-U212738	Lycopersicon Combined #3
SGN-U212739	Lycopersicon Combined #3
SGN-U232088	Lycopersicon Combined #3
SGN-U232089	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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