Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577711, SGN-U579208, and SGN-U579547 in the current build, Tomato 200607 #2

Unigene SGN-U314753

Unigene Basic Information

Unigene ID:	SGN-U314753
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314753
mRNA sequence:	Length: 1843 bp

>SGN-U314753 Tomato 200607 #1 (93 members)
GAGAAAGCAAGTCGGCCACAAGTCATCATCCGTTTGCCTTTGCTTTTCAGATCCATTTTCATTTCCTTTTCGTTGATTAAAAATGGCCGA
CGGTGAGGATATTCAGCCCCTTGTTTGTGACAATGGAACTGGAATGGTTAAGGCAGGATTTGCTGGTGATGATGCTCCTCGAGCAGTGTT
TCCCAGTATTGTGGGTCGTCCCAGGCACACAGGTGTTATGGTCGGAATGGGACAGAAGGATGCATATGTGGGTGATGAAGCTCAATCTAA
GAGAGGTATCTTGACCTTGAAATATCCCATTGAGCATGGTATAGTCAGCAATTGGGATGATATGGAGAAGATATGGCATCATACTTTTTA
CAATGAGCTTCGAGTTGCTCCTGAGGAACACCCTGTTCTCCTGACTGAGGCACCCCTTAATCCCAAGGCCAACAGAGAGAAGATGACCCA
GATTATGTTTGAGACATTTAATGTTCCTGCTATGTATGTTGCTATCCAGGCTGTGCTTTCTCTGTATGCTAGCGGTCGTACCACTGGTAT
TGTGTTGGACTCTGGTGATGGTGTTAGTCACACTGTCCCTATCTATGAAGGTTATGCTTTACCACATGCCATTCTTCGTTTGGACCTTGC
TGGTCGTGACCTTACTGATAGCTTGATGAAGATCCTCACCGAGAGAGGTTACATGTTCACCACTACTGCTGAACGGGAAATTGTACGTGA
CATGAAGGAAAAGCTTGCTTATGTGGCTCTTGACTACGAGCAGGAACTTGAAACCGCTAGGAGCAGTTCCTCCATTGAAAAGAACTATGA
GTTGCCAGATGGACAGGTTATTACCATTGGTGCTGAGAGGTTCCGTTGCCCAGAGGTACTCTTCCAACCATCAATGATTGGAATGGAAGC
TGCGGGTATCCATGAGACTACATACAACTCCATCATGAAATGTGATGTAGATATTAGGAAGGACCTCTATGGTAACATTGTTCTCAGTGG
TGGCTCCACCATGTTCCCTGGTATTGCTGATCGGATGAGCAAGGAAATCACTGCTTTGGCTCCAAGCAGCATGAAAATTAAGGTTGTTGC
ACCACCTGAGAGGAAGTACAGTGTCTGGATTGGAGGATCCATTCTTGCATCCCTCAGCACATTCCAGCAGATGTGGATCTCAAAGGGCGA
GTATGATGAGTCTGGTCCTTCCATTGTCCACAGAAAGTGCTTCTAAGGTGCTGCTATAATTACTTAAAAGTGCGAGTGTCCTGTCTGTTT
CCCGGTTTTGCTATTATGTTGCCAGTCAATTTGTTTTTTTGATGGGATGGAGAAGTTTGGTGGTGGGGGCTATGAATGCACGGTAGCAAA
CAACAGATTGCCAGTATTATCTCATGTTTCCATTTAATGTGGTTAATATTCTCTACATACTTGAGAGGTGCCTGATGCATTGCCCTCTTC
TGTCTGGCTACACCATCCCTTGGTCGAAGCGTCTCTTTTTTAGGTTGTTTGTAGTTGAAGGAGAGTGATTGTGATGTTTTCTCCTCGTCT
TTTCTCTCATTTTCTCCTTTTATCTGATTTTGCACTTTTGTGGTTCTTTTTTTTCTTGGACCCAATAATGTCAATATTTATTGAATGAGA
AAATTCCTATATCATATCAGTTTGAGGAAAAAAAAAAAAATTGTGTGGATAAAAAAAATTTGACTCTTTATTGGCGATATTTTGTATTCT
ATTGTTGCTGTTTTGGATGTGGTTTCAGAACTTCCTTAGTGCATTTGCTCTTAAATCTGTTTTGCAGTAAAATTGAGGCTATAAAAGCTT
CATTGCAGATTACCCTCGGATGAGGGATCTCCTCATTGCCTGT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
act	actin

Genomic locations (0)

None

Library representation (24)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	24
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	6
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	9
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	8
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	12
Solanum lycopersicum	cTSC	seed	2256	1

mRNA member sequences (93)

Alignment image suppressed for unigene with 93 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (9)

Annotations (manual: 2 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101492	Actin/actin-like - Molecular Function: protein binding (GO:0005515)	103
2	118476	Actin/actin-like - Molecular Function: protein binding (GO:0005515)	96
5	128974	Actin/actin-like - Molecular Function: protein binding (GO:0005515)	93

Preceding Unigenes (2)

Unigene	Build
SGN-U213130	Lycopersicon Combined #3
SGN-U232338	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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