Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U575407 and SGN-U575409 in the current build, Tomato 200607 #2

Unigene SGN-U314973

Unigene Basic Information

Unigene ID:	SGN-U314973
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314973
mRNA sequence:	Length: 1123 bp

>SGN-U314973 Tomato 200607 #1 (37 members)
AGGCTCTCATTTAAATATATCATACCGCCGCCGTACTGCTCGACGCCTCCAGTTCCTCTCCGTTATCAACAGAGCAGCAGCAACCGTCGA
AAAGCTTACATTGTCCTAAAGCAATGGCTGTTGCATTCCACAACCTCAACTCTGACTCTGGCCTCAAGAAGCTTGATGAGTACCTCTTGG
CCCGCAGTTACATCACTGGGTACCAAGCCTCAAAGGATGATATCACTGTGTATTCATATCTAGCAAAATCCCCATCAGCTGAATATGTTA
ATGCGTCTAGGTGGTATAAGCATATTGATGCTCTTCTGAGAATCTCTGGTGTATCCGGTGAAGGTGCTGGTGTTATTGTAGAGGGATCTG
CACCTATCACTGAAGCTGTGGCAACTCCCCCTGTTGCTGACAGTAAGGCCTCAGCTGCTGAAGAAGAAGATGACGATGATGATGTTGACC
TATTTGGTGAGGAAACTGAGGAGGAAAAGAAGGCTGCTGAAGAACGTGCTGCAGCGTTGAAGGCTTCAGGGAAGAAGAAAGAATCTGGCA
AGTCCTCTGTTCTCATGGATGTCAAGCCATGGGATGATGAGACCGATATGAAAAAACTTGAAGAAGCTGTTCGTAGTGTTCATATGGAAG
GATTGACTTATGGAGCATCTAAACTTGTTCCTGTTGGATATGGTATTAAGAAGCTGCAAATTATGCTTACCATTGTGGATGATTTGGTCT
CCGTGGATGATCTCATTGAGAATCATCTTACTGTTGAACCTATCAACGAGTACGTTCAGAGTTGTGACATTGTTGCTTTCAACAAAATAT
GAAATTTGTTGCTCTGAAGTTTTGATGGAAGAACTGGGCGGCCTTTTCCGATTATGCCATCTGTTTTGCTCCTCGTTTGGAAGAGTATTT
TATATTTCTTAAGTATCAGTTTTGAAAGAAGTCTTCACTTTGCTGTAGCTGGCTCTCTTGGTTGACGTTTTAACTATTTTATTACTTGTA
TTGTACCCTCCATGATTTCATCAAAACTGAACTTGTATTGGTGTTTTATGCTTGTGGAGCCTGCAGTAATACTACTTGGTAGTACAGTGT
TGTGTGAAGAGTGAAAATATTTGGCAGGTAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ddtfr10	ripening regulated protein DDTFR10

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	8
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	5
Solanum lycopersicum	LA	Leaf Mature leaves	6589	3
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	4
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (37)

Alignment image suppressed for unigene with 37 aligned sequences.
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Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101929	Glutathione S-transferase C-terminal-like Elongation factor 1 beta/beta&apos /delta chain - Molecular Function: translation elongation factor activity (GO:0003746) - Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853) - Biological Process: translational elongation (GO:0006414)	28
2	118830	Elongation factor 1 beta/beta&apos /delta chain - Molecular Function: translation elongation factor activity (GO:0003746) - Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853) - Biological Process: translational elongation (GO:0006414) Glutathione S-transferase C-terminal-like	28
5	129259	Elongation factor 1 beta/beta&apos /delta chain - Molecular Function: translation elongation factor activity (GO:0003746) - Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853) - Biological Process: translational elongation (GO:0006414) Glutathione S-transferase C-terminal-like	28

Preceding Unigenes (2)

Unigene	Build
SGN-U214943	Lycopersicon Combined #3
SGN-U214944	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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