Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U581974 and SGN-U581975 in the current build, Tomato 200607 #2

Unigene SGN-U315065

Unigene Basic Information

Unigene ID:	SGN-U315065
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315065
mRNA sequence:	Length: 1243 bp

>SGN-U315065 Tomato 200607 #1 (47 members)
CCACCACCAAATTTAGCTCGAACTCAACTCCAACTATTATGGCTTTCTCGTCGCCGTTGTTTTCTCCGGTCAACTTCACCTTAAACCCTA
ATCCCCAACTCAATCATCCAAAAAGCACAAAGCCAAACAACCGCCGGAACCTCACCGTCTGCGCCATTCCGCCGCTCTCCACCGCTACCG
ACATCTCCGCCGTCACCGGTTCGTTGGACGGTAAGACTCTCGCCGTACTTGGAGGTAGTTCAGTGGCGGCACTTGCTGCTATTCTCTCGC
TCGCCGACCCCGAGCGCCGTCGGCAACTTCAGGCGGAGGAGGTCGGAGGCGGTGATAAGGAGGTGGTGAGGGAGTATTTCAATAACAATG
GGTTCCAGAGGTGGAAGAAGATATATGGTGATACGGATGATGTGAATAAAGTGCAGTTGGATATAAGATTGGGACATTCAAAAACGGTTG
AGAATGTGATGAAAATGTTGACGGAAGAGGGATCTCTACAGGGAGTTACTGTATGTGACGCCGGTTGTGGGACCGGTTGTTTGTCGATTC
CATTAGCTAAAGAAGGTGCCATTGTATCAGCTAGTGATATTTCAGCTTCCATGGTAGCTGAAGCCCAAAAACAGGCGCAAGAGGAGTTGT
TCAAGAGTAAAGATGACCAATCCCTGGCACCAGTAATGCCGAAATTTGAAGTGAAGGACTTGGAGAGTTTGGATGGGAAGTATGACACTG
TGGTTTGCTTAGATGTTATGATACATTACCCACAAAGTAAGGCTGATGGTATGATTGCTCATCTTGCATCATTGGCTGAGAACCGTTTGA
TCCTGAGCTTTGCACCGAAAACATTTTATTATGATTTGTTAAAAAGGATTGGAGAGTTGTTCCCTGGACCTTCAAAGGCTACACGAGCAT
ATCTACATGCAGAGGCTGATGTGGAGAGGGCACTGCAAAAAGCTGGATGGAAGATAAAGAAGAGAGGCTTGATCGCCACACAATTTTACT
TTGCAAAGCTTATTGAAGCTGTCCCTGCTTAAGATTGAAAGGCAATCTCATTTGTTTGGCAATGTTTCTTCACTGCTGGTTAGATATTAG
AAAGTCCGTTGAGTGTTTATTATGAATACGTTCTTTCACTCCTCAGTTTCTAACTTGTATAATAGTTCACAATGTATCTGAATTCTGCTT
CTGACTTGGAAAAATTTTGTCGATATTATTAATATATTATGAAATGTAAATTTAAACATAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	33
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2

mRNA member sequences (47)

Alignment image suppressed for unigene with 47 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 0 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	103988	Magnesium-protoporphyrin IX methyltransferase C-terminal - Biological Process: photosynthesis (GO:0015979) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: magnesium protoporphyrin IX methyltransferase activity (GO:0046406) Magnesium protoporphyrin O-methyltransferase - Biological Process: photosynthesis (GO:0015979) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: magnesium protoporphyrin IX methyltransferase activity (GO:0046406) SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757)	5
2	122587	SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757) Magnesium protoporphyrin O-methyltransferase - Biological Process: photosynthesis (GO:0015979) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: magnesium protoporphyrin IX methyltransferase activity (GO:0046406) Magnesium-protoporphyrin IX methyltransferase C-terminal - Biological Process: photosynthesis (GO:0015979) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: magnesium protoporphyrin IX methyltransferase activity (GO:0046406)	5
5	132783	SAM (and some other nucleotide) binding motif - Molecular Function: S-adenosylmethionine-dependent methyltransferase activity (GO:0008757) Magnesium protoporphyrin O-methyltransferase - Biological Process: photosynthesis (GO:0015979) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: magnesium protoporphyrin IX methyltransferase activity (GO:0046406) Magnesium-protoporphyrin IX methyltransferase C-terminal - Biological Process: photosynthesis (GO:0015979) - Biological Process: chlorophyll biosynthesis (GO:0015995) - Molecular Function: magnesium protoporphyrin IX methyltransferase activity (GO:0046406)	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U217574	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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