Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U579948 in the current build, Tomato 200607 #2

Unigene SGN-U315205

Unigene Basic Information

Unigene ID:	SGN-U315205
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315205
mRNA sequence:	Length: 2280 bp

>SGN-U315205 Tomato 200607 #1 (27 members)
GTCATCTTCGTTGATAACAGTGAGATAGAGAGAGAAACAAGAAAAATATCATAGAAAAAACAGTATTACAAGGGGGAAAAAGTACACACA
AAGAGGAATAGAGGAGCGTCTTCTGTTGAAAATGGTGGATTTACACTCAGGTGTAACAGAAGTACTGTAAAGGTTGGATTTTGGTAAAGT
TGAAAGGGTTTTTTTTTGGTTGACTGGTAGAGTTGAAATTTGGGGAAAAATAAATGGCTGGTGACAATGACGAAGGTCATAGTGATATGG
TCCAGAGACTTCAATCATCATTTGGGACATCATCGTCTTCACTTCCTAAACAGCTTCAACCTATTTCGATGAACCAATTGGACATACCCC
AGTTGACAACTTCTCAATTTAGGGGTCAAATGAGGCAATTTTCTCCCAATTTTGGTGTTGAAAATAGTAAAAGAGTAGGTATACCGCCTT
CTCACCCGCAAATGCCCCCTATTTCACCATATTCTCAGATCCCTGTAACCAGGCCAGGGAATCAGCAAATGGGTATGCAGAACTTTACTA
GTGCAGGGCCATCACACTCGCGATCTTTATCACAACCAGCGTTTTTCTCACTGGATTCCTTGCCACCCTTGAGCCCTTCACCGTATAGGG
AATCCCCGTCCACGTCTATGTCTGACCCGATATCTGCTGATGTCTCAATGGGTGATCAGGATGGCAATTCACATTCTTTATTGCCGCCTA
CGCCTTTCTCTAGGTGTAATTCATCGAGGGCAGGGGAGAGTCTTCCTCCTCGTAAGGCTCATAGGAGGTCTAATAGTGATATACCATTCG
GCTTTTCTGGTATAATGCAGTCATCACCACCACTTGTTCCGCTAAGGAGTCCTGGTGCTCTTGAAAGGTCAGTTCCTTCAAGGGATAATT
TGGGTGGTAAACCAGTTCAGTTGGTTAAACGTGAATCTATGTGGGAAAGAGGAAATGATAATAACAATGTTGAAGGGATGGGTGAGAGGA
AATCTGAAGGAGAAGTTGTGGACGACCTGTTTTCTGCATATATGAATTTGGACAACATTGATGCATTTAACTCTTCGGGAACTGATGAGA
AGCTGGGTATTGAGAACCGTGAAGATTTAGATAGTAGAGCGAGTGGTACAAAGACGAATGGTGGTGACAGCAGTGATAATGAAGCTACAA
GCAGTGTCAATGACAGTAGCAGCGGCAGTATGCAGAAGAGAGAAGGGGTCAAAAGGAGTGCTGTGGGAGATATCGCTCCAACCACTAGAC
ACTACAGGAGTGTTTCGATGGATAGTTTTATGGGGAAGTTAAACTTCATCGATGATTCACCAAAGTTGCCTCCATCTCCTGGACCACGCC
CAGGCCAACTCTCACCAACCAATTCACTTGATGGAAATTCAAACAGTTTCAGTTTGGAATTTGGAAATGGTGAATTTAGTGGTGCTGAAT
TGAAGAAAATTATGGCAAATGAAAAACTTGCAGAGATAGCTTTAGCAGATCCAAAACGAGCCAAAAGGATTTTAGCCAACCGTCAATCTG
CTGCTCGTTCTAAAGAAAGAAAGATGAGATACATTGCAGAATTAGAACACAAGGTTCAGACATTGCAGACTGAAGCAACCACATTATCTG
CTCAACTGACCCTCTTGCAGAGAGATGCGACTGGGCTGACAAGCCAAAATAGTGAACTGAAGTTTCGTTTGCAAGCCATGGAACAGCAAG
CTCAACTTCGTGATGCTCTAAATGAAGCATTAACTGCTGAAGTTCAACGCTTGAAGATAGCAACCGCAGAGCTTAGTGCAGACGCTTCCA
AGTTTCAGCAGCTATCTCTAAATCCTCAGATGTTCCAATCGCAGCAGCAACAATCGAATCAGCTAAACATGCATCAGTTGCAACAGCAGC
AGCAGCAGCAACAATCATCTCAGCCACAACAACATGCTCAAGCACGACAACAACTTAACAGCTCGACGACTTCAAAGCATGAATCAAAGT
AGTAGCTTTTGGGAAATATCTCATCTTCATAATATTTATGTTAGTTTGTCAATAGATGTTGCAAGTGTTTTCATATCATTCAATGCATTC
ATTCATTTAGTTCTGCATTCACAACAAAACACACCGAGTCTTGGTATTTATTATCTATAGGACATGCATGTTCATTGGATTTACTTAGTC
ACAGAGTCTTGTGATGTATACAGTTGGTTCTTTTTTTTTTGTTCAACAAGGATATTGAATTCAAGGTCATATGAACTTGACTCGTTTTGT
TATTATGGAAGTTTAATTCAAATTTGCCTA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	9
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	3
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (27)

Alignment image suppressed for unigene with 27 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 0 | blast: 2 | go: 7 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101428	Basic-leucine zipper (bZIP) transcription factor - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) - Molecular Function: protein dimerization activity (GO:0046983)	192
2	118722	Eukaryotic transcription factor DNA-binding Basic-leucine zipper (bZIP) transcription factor - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) - Molecular Function: protein dimerization activity (GO:0046983)	33
5	130622	Eukaryotic transcription factor DNA-binding Basic-leucine zipper (bZIP) transcription factor - Cellular Component: nucleus (GO:0005634) - Biological Process: regulation of transcription DNA-dependent (GO:0006355) - Molecular Function: sequence-specific DNA binding (GO:0043565) - Molecular Function: protein dimerization activity (GO:0046983)	9

Preceding Unigenes (1)

Unigene	Build
SGN-U214147	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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