Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U574362 in the current build, Tomato 200607 #2

Unigene SGN-U315825

Unigene Basic Information

Unigene ID:	SGN-U315825
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315825
mRNA sequence:	Length: 3149 bp

>SGN-U315825 Tomato 200607 #1 (35 members)
TTATTTTTGCACAGGATACGATTGCACATGTAATTTCTGTTGATATGCTCTCTGGAAAGGAAGATCGCGAGAATGTTTTACGTGCAAGGG
AATCAGGAAAGGGTGTCCTCACAGCTCCATTCAGACTACTTAAAACAAATCGCCTTGGGGTGATAAAGACATTTGCAGTTTACAAAACTG
ATCTTCCTTCTAATGCAACTCCAAATGAAAGGATCCAGGCAACTGACGGGTATCTTGGTGGAGTACTTGACATTGAATCACTTGTAGAGA
AGCTTCTTCAGCAACTTGCAAGCAAACAAACTATCCTTGTAAACGTCTATGATACAACTAATATCTCCCACCCTATTAGCATGTATGGTT
CAAATGTGTCGGGTGATGGTCTGGAGCATGTCAGTGCCCTCAACTTTGGGGATCCATTTAGAAGGCATGAGATGCGTTGCAGATTCAAAC
AGAAACCACCGTGGCCTTGGCTAGCCATCACAACAGCGACAGGAATCCTCATAATTGCATTGCTTATAGGGCAAATATTTCATGCAACCA
TCAACAGAATCGCCAAAGTTGAGGATGATTATCATGAGATGATGATGCTGAAAAAACGTGCAGAGGCTGCTGATGTTGCAAAGTCACAGT
TTCTTGCTACTGTTTCCCATGAAATCAGGACCCCCATGAATGGTGTTCTTGGCATGCTTCATATGCTTACGGACACCAATCTAGATGTGA
CGCAACAAGATTATGTCAGCACTGCTCAGGCCAGTGGTAAAGCTTTAGTTTCGCTCATAAATGAGGTTTTGGACCAAGCAAAGATTGAAT
CTGGTAAGCTTGAGCTCGACGCAGTTTGTTTTGACGTGAGAGATACGCTGGATGAGGTTCTGTCACTCTTTTCGGGGAAATCTCAAGAAA
AAGGAGTTGAGTTGGCCGGTTACATCTCTGATAAGGTTCCTGATGTACTCATTGGTGACCCTGGACGGTTTCGTCAGATTATCACAAACT
TGGTGGGGAACTCTATCAAATTCACTGAAAAAGGTCATATATTTGTGACGGTCCATCTCGTCGAGGAAGTGACAGAGTCAGCCGAGGAGT
TCAAGGTGAATTCATTGTTCAAGAGCACTTTGAGTGGATCGCCTGTAGCCGATAAGCGACAGAGCTGGAGAAGTTTCATGGGTTTCAATC
AAGAAGGATCTTCTTTCACATCTTCCTCGTCGGACCAGATCAATCTAATGGTGTCAGTAGAAGACACTGGTGTTGGAATTCCTTTAGATG
CTCAATCTCGTATATTCACCCCCTTCATGCAGGTTGGTCCTTCTATTGCTCGCACCCATGGGGGAACTGGTATTGGACTTAGCATAAGCA
AATGTTTGGTACAGCTTATGAAAGGTGAAATTGGGTTTGTAAGTTTGCCAAAGATTGGATCCACCTTTACTTTTACTGCTGTTTTCACCA
ATAGCCGCAATAATTGGAATGAGAAGAAGAGCCAGCAAATAAACAATCAATCGAACTCTATTTCTTCAGATTTCCATGGCTTGAGAGCCT
TAATTGTCGACCCAAGAACTGTCCGTGCAAGGGTCTCACAGTATCACATGAAACGACTTGGAGTCCATACTGAAGTGGTCTCAGATTTGA
ATCGTGGTTTGTCTCATGTAAGAACTGAAAATGGAGTTACGAATATGATCCTCATTGAACAGGAAGTCTGGGATGCTGATTTGGGAAAGT
CAAGTCTTTTTGTCAAAAACTTAAGAAAGATCAACGCCAGTAGTTCTCCCAAACTTTTCATATTAGCCAATTCTATAAATTCTAGCCGAG
CGGGTGTCTCAGTCAACGGTTTTCCTACTCCATTTATCATCATGAAGCCATTAAGAGCAAGTATGCTTGCTGCATCACTCCAACGTGCCA
TGGGCGTTGGTAACAAGGGAAATTGTACAAATGGAGAGCTCTCTGGTATCTCTCTTTCCAAGCTCCTTCAGGGGAGAAAAATTTTGATTG
TGGACGACAACAACGTGAACCTTAGAGTAGCTGCTGCTGCACTGAAGAAGTATGGTGCTGATGTTATCTGCACAGACAGTGGAAAAAAAG
CACTCACTTTTTTACAACCACCTCATCAATTTGATGCCTGTTTCATGGATATTCAGATGCCAGAAATGGATGGGTTTCAGGCTACAAAAA
TAATCCGCGAAATGGAATCTGATATCAATAGCCGTATCAAACTTGGGCAACTACCTCCTGAAGCATACGGAAATGTTTCAAGCTGGAAAG
TGCCCATTCTGGCCATGACTGCTGACGTAATTCAAGCTACAAATGAACTGTGTCAAAAATGTGGAATGGATGGTTATGTTTCAAAGCCAT
TTGAGGCTGAGCAGCTTTATGAAGAAGTATCACGCTTTTTCCAGATCAAGCCAACTCAGAATACCTGAAGAGCATTCCTGATGAATTCTT
ACGATCAACCTCGAGTAGAAATGCCATCGACTTCATGGTGCCTCAAGGTCGTTCACACTTTCTTTTTTTCCAACTGTGAGTTCTCTATGT
CCCAAGCACGATTACTTCTGCAAGGTTAGATACTTGTTCAATATCTTGGTGTCCACCACTTGGATTCGACTGCATTCTTTTTCAGGGAAT
GAATCTCTGAAATGTACATAAAACTTGAAGGATTGACATATTCCAAGCTCGAGGAGCGGAGGAGGAGTTGGGCTTCTCTCATCAAGAAAG
AAATATTACAATCCTTTAGATGCTTTAGGCTTGTTAGAAAGGATGTTTGCCTGGAGAGTGGTTATATAGTTTATATAGCAACAAACATTG
TTTGTAACAGAAATATGTTGTCATGTATATTCTCAAATCTACATAGGGAATTAGTCATAATAGGTGAAAGAAAAAGTTTTAGTTCAGTCA
GTCATAGTTGGCATAAACTTAGGGACAGCAAACAGTTGAATTTGCTATTTTTTCCCCCCCTTTTGTGTATAGTAGAAAAAACAAGTTTGA
TGTAGGCACATTTTGATATCAAGTATAAAAGTAAGTTACAATTAAAAAAAAAAAAAAAAAATATATGTGAACTAGGTCAATATTTGTGGA
GCCAAATTATGACCCATTTTGTACAGTAAATGCAACTTGTTTACAGTAAAGAGTTTGTTGCCATAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (11)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	12
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	6
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	cTSC	seed	2256	1

mRNA member sequences (35)

Alignment image suppressed for unigene with 35 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 5 | blast: 2 | go: 11 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P118614 (920 Aa)

IFAQDTIAHVISVDMLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVIKTFAVYKTDLPSNATPNERIQATDGYLGGVLDIESLVEK
LLQQLASKQTILVNVYDTTNISHPISMYGSNVSGDGLEHVSALNFGDPFRRHEMRCRFKQKPPWPWLAITTATGILIIALLIGQIFHATI
NRIAKVEDDYHEMMMLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLTDTNLDVTQQDYVSTAQASGKALVSLINEVLDQAKIES
GKLELDAVCFDVRDTLDEVLSLFSGKSQEKGVELAGYISDKVPDVLIGDPGRFRQIITNLVGNSIKFTEKGHIFVTVHLVEEVTESAEEF
KVNSLFKSTLSGSPVADKDRAGEVSWVSIKKDLLSXSSSSDQINLMVSVEDTGVGIPLDAQSRIFTPFMQVGPSIARTHGGTGIGLSISK
CLVQLMKGEIGFVSLPKIGSTFTFTAVFTNSRNNWNEKKSQQINNQSNSISSDFHGLRALIVDPRTVRARVSQYHMKRLGVHTEVVSDLN
RGLSHVRTENGVTNMILIEQEVWDADLGKSSLFVKNLRKINASSSPKLFILANSINSSRAGVSVNGFPTPFIIMKPLRASMLAASLQRAM
GVGNKGNCTNGELSGISLSKLLQGRKILIVDDNNVNLRVAAAALKKYGADVICTDSGKKALTFLQPPHQFDACFMDIQMPEMDGFQATKI
IREMESDINSRIKLGQLPPEAYGNVSSWKVPILAMTADVIQATNELCQKCGMDGYVSKPFEAEQLYEEVSXLFPDQANSEYLKSIPDEFL
RSTSVEMPSTSWCLKVVHTFFFSNCEFSMSQADYFCKVRYLFNILVPPLGFDCILFQGMNPEMYIKLEGLTYSKLEEGGGVGLLSSRKKY
YNPLDALGLLERMFAWRVVI

SignalP predicts non-secretion with a score of 0.057

IPR004358 Histidine kinase related protein, C-terminal
IPR001789 Response regulator receiver
IPR003661 Histidine kinase A, N-terminal
IPR006189 CHASE
IPR001093 IMP dehydrogenase/GMP reductase
IPR003594 ATP-binding region, ATPase-like

Prediction based on longest six frame method

>SGN-P245034 (801 Aa)

IFAQDTIAHVISVDMLSGKEDRENVLRARESGKGVLTAPFRLLKTNRLGVIKTFAVYKTDLPSNATPNERIQATDGYLGGVLDIESLVEK
LLQQLASKQTILVNVYDTTNISHPISMYGSNVSGDGLEHVSALNFGDPFRRHEMRCRFKQKPPWPWLAITTATGILIIALLIGQIFHATI
NRIAKVEDDYHEMMMLKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLTDTNLDVTQQDYVSTAQASGKALVSLINEVLDQAKIES
GKLELDAVCFDVRDTLDEVLSLFSGKSQEKGVELAGYISDKVPDVLIGDPGRFRQIITNLVGNSIKFTEKGHIFVTVHLVEEVTESAEEF
KVNSLFKSTLSGSPVADKRQSWRSFMGFNQEGSSFTSSSSDQINLMVSVEDTGVGIPLDAQSRIFTPFMQVGPSIARTHGGTGIGLSISK
CLVQLMKGEIGFVSLPKIGSTFTFTAVFTNSRNNWNEKKSQQINNQSNSISSDFHGLRALIVDPRTVRARVSQYHMKRLGVHTEVVSDLN
RGLSHVRTENGVTNMILIEQEVWDADLGKSSLFVKNLRKINASSSPKLFILANSINSSRAGVSVNGFPTPFIIMKPLRASMLAASLQRAM
GVGNKGNCTNGELSGISLSKLLQGRKILIVDDNNVNLRVAAAALKKYGADVICTDSGKKALTFLQPPHQFDACFMDIQMPEMDGFQATKI
IREMESDINSRIKLGQLPPEAYGNVSSWKVPILAMTADVIQATNELCQKCGMDGYVSKPFEAEQLYEEVSRFFQIKPTQNT

SignalP predicts non-secretion with a score of 0.057

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101374	Homeodomain-like	561
2	119470	CheY-like Histidine kinase A N-terminal - Molecular Function: two-component sensor activity (GO:0000155) - Biological Process: signal transduction (GO:0007165) - Cellular Component: membrane (GO:0016020) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Histidine kinase related protein C-terminal - Biological Process: phosphorylation (GO:0016310) - Molecular Function: transferase activity transferring phosphorus-containing groups (GO:0016772) Histidine kinase - Biological Process: protein amino acid phosphorylation (GO:0006468) - Molecular Function: kinase activity (GO:0016301) Response regulator receiver - Molecular Function: two-component response regulator activity (GO:0000156) - Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160) - Biological Process: regulation of transcription DNA-dependent (GO:0006355)	15
5	130393	CHASE CheY-like Histidine kinase A N-terminal - Molecular Function: two-component sensor activity (GO:0000155) - Biological Process: signal transduction (GO:0007165) - Cellular Component: membrane (GO:0016020) ATP-binding region ATPase-like - Molecular Function: ATP binding (GO:0005524) Histidine kinase related protein C-terminal - Biological Process: phosphorylation (GO:0016310) - Molecular Function: transferase activity transferring phosphorus-containing groups (GO:0016772) Histidine kinase homodimeric Histidine kinase - Biological Process: protein amino acid phosphorylation (GO:0006468) - Molecular Function: kinase activity (GO:0016301) Response regulator receiver - Molecular Function: two-component response regulator activity (GO:0000156) - Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160) - Biological Process: regulation of transcription DNA-dependent (GO:0006355)	10

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U214512	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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