Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U577589 in the current build, Tomato 200607 #2

Unigene SGN-U315889

Unigene Basic Information

Unigene ID:	SGN-U315889
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315889
mRNA sequence:	Length: 1465 bp

>SGN-U315889 Tomato 200607 #1 (34 members)
ATCGGCCGAATTGCTATCTCTACTACTACTATATTCTCCTCTCAACAAAAATCTGGAGCCTTAACGCTAACATGCGCTGGGCTCTATTTT
CCACCGCCGCTGCCACCGCCACCGTCGATTCGTCGATCTAGGGTTTCTCTCTTGGTGGGTTTCGGAAATTTTCTGATCCAATTTTATAAG
AACAGAGAAATCTCTTAGTTCTGGAAAAATGGGTCTTTTAAGTGCTTTTGCAGCTGGGTTTGTGGTTATATTGATGGTCTTTGAAGGGAT
GGCGTCGCCGGAGACTGCTAATGTGTCGGTTCGCTCAGTTTGTCCATTGAAATCTGTTAAAGATTCGATTTTTATGGGGTTTCAAGATTT
GACTTGTCCATTAGATGGGATCCAATCTTCTTATGTGGCTGAAGTTATTCAGGGAGATGAGCTGTCATTGCAGAGGGCACTAAGTATGAT
TCACCGGAATACACATGATTATGTTGCTTTGCTTTTCTATGCATCCTGGTGTCCTTTCTCTAGAAGTTTTAGGCCAAAATTTTCCATCAT
GTCTTCTTTGTATCCTTCAATTCCCCATTTCGCAATTGAAGAGTCAGCTGTTAAGCCAAGCACTCTCTCAAAGTATGGAGTTCATGGGTT
TCCGACTCTCTTCCTTTTAAACTCAACAATGCGCATGCGGTATCATGGCTCTCGCTCCCTTGATTCAGTGATTGAATTCTATGGTGGCAC
TACTGGTTTTCATAGTGCTTCGGTGGATGCCACTTCTCTTGGCAAAATGGGATGCTCCTCAAATCTTTTGAAACTGCATGGAAGTGACCA
GGAAAACTGTCCATTCTCCTGGGCCAGATCTCCTGAGAACCTTTTTCAGCAAGAGACATATTTGGCCTTAGCCACTGCATTTGTGCTATT
GAAAGTACTTTATATGATATTTCCAGCTTTACGTAAGATAGCTCAAATTGGCTTGGGAGGTTGCATATTACAAATAAGAATAAGAAGCTT
GTGGGAGCTTCCTCTGCTATACCTGAACCGAGCTGTACAATTATGTAATTCACTGAAGGAGCCATGCAAAAGAAGCAACTTGCAGGAAGG
AGCTATGAATGCCAAGGCATGGGCTTCAAAGTCTTTAGCGTCTGTCTCATTCGGAGAGTCTAGCGCTAGCCGGGTGGAACCAGTAAGTTC
AACTCACTAATTGCTTTGATGGCCATATCTATAATCATAGTGCTCTTTTATAATTGTTTTAGCAACCATAATTGGTGCTGGTATTATCCG
ATTGGCGCAGCACTATGCAATATCAAGCTTTTGAAACGATATGCTTCAATTTTATGTAATGTAGATTAGAATTTTTTTCTCACCGTCGGA
GAAATAATGTACCCACATTGTATATAGCTTTAACTAATAGGCAGAGCTTTTGAATTCAGATCTTTGTTTATTTAATTAAATCAAGACACT
GTCTAGTTCCTTTTGTAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (34)

Alignment image suppressed for unigene with 34 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 0 | blast: 2 | go: 5 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	102662	Thioredoxin fold Thioredoxin-like fold Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118)	11
2	119952	Thioredoxin fold Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin-like fold	11
5	131688	Thioredoxin fold Thioredoxin-related - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain 2 - Molecular Function: electron transporter activity (GO:0005489) - Biological Process: electron transport (GO:0006118) Thioredoxin domain Thioredoxin-like fold	6

Preceding Unigenes (1)

Unigene	Build
SGN-U214929	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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