Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U562701 in the current build, Tomato 200607 #2

Unigene SGN-U315903

Unigene Basic Information

Unigene ID:	SGN-U315903
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	315903
mRNA sequence:	Length: 1934 bp

>SGN-U315903 Tomato 200607 #1 (34 members)
GGTGGAGTGTATACTACAAACCGGCCTAGACGACTGAGGTATTAACGTTAATCGCCGATTCCTAAACCCTAGTTTTGTTCTTCGTATATC
GGAGATGGCGAAGAAGAAAGAGAGGTCGGTGAATGTATCGGGAAAGCCAAAGCATTCATTGGACTCCAATAGGGATGTCAGCGCAGCCAA
AAATGGCCGTAGCGCCGCTACTGTGCGGCGGCTCAAGATGTACAATACCAGGCCGAAGCGTAATCCTCAGGGTCACATAATTAAGCACGA
CTTACAATCAAAGGAGCTGCCATCAACAAGGATACAACCAGATCGTCGTTGGTTCGGTAATACTCGGGTGGTCAACCAGAAGGAACTGGA
GTTTTTTAGAGAAGAGCTCCAAACTCGGCTTTCCAGTAACTACAATGTTATATTAAAAGAAAGGAAGTTGCCCATGTCCCTTTTAAATGA
TCATCAGAAGCAAGTAAAAGTTCATCTGCTTGACAATGAGCCATTTGCTGATGCTTTTGGACCAAAAACAAAGAGGAAACGCCCCAAACT
TATGGCATTAGATTATGAAGCTTTAGTGAAGAAGGTTGATGTGTCTCATGATGATTTTGAAGACAAACATGGTGCTAGCACCTCCATGGA
TGAAAATGCTGATGGATTCAGAGATCTTGTTAGGCACACAATGTTTGAGAAAGGACAAAGTAAACGAATTTGGAGTGAGCTCTACAAAGT
CATAGACTCTTCTGATGTCGTTATTCAGGTTCTTGATGCCAGAGACCCCTGTGGTACAAGGTGCTACCATTTGGAGAAACATTTGAAAGA
AAATTGCAAGCACAAACATATGGTCCTTTTGCTTAATAAGTGTGATTTGGTCCCTGCTTGGGCAACAAAGGGATGGCTTAGAGTGCTCTC
TAGGGAATATCCAACTTTGGCATTTCATGCAAGTGTCACCAAGTCCTTTGGAAAGGGTTCTCTTTTGTCAGTGCTGAGACAGTTTTCTCG
TCTAAAGAGCGATAAGCAAGCAATCTCTGTTGGTTTTATAGGCTATCCCAATGTTGGCAAGTCATCAGTTATTAATACATTGCGCACAAA
GAATGTTTGCAAGGTGGCTCCTATCCCAGGAGAGACTAAAGTGTGGCAGTACATTACACTCACAAAGAGGATATTCTTGATTGATTGTCC
TGGTGTAGTTTATCAGAATCATGATTCCGAAACAGATATAGTCTTGAAGGGCGTGGTACGAGTGACAAACCTACCTGATGCTTCTGAACA
CATTAGCGAAGTGTTGAATCGCGTTAAGAAGGAGCATCTTAAAAGAGCTTATAAGATAGAGAATTGGGTTGACGAGTATGACTTTCTTCA
ACAGCTATGCAAGTCTTCAGGCAAACTTCTGAAGGGAGGTGAACCTGACTACAATACTGCTGCCAAGATGGTTCTCCATGATTGGCAAAG
AGGCAACATTCCTTTCTTTGTTCCACCTCCAAAGCTTGATGATGAGCCAAATGAACTTGTCGCAGAGGCAGACACAGCCGTTGATAACGA
TCAGGCCACAGCTGCTCTCAAAGCTATTGCTGACGTCGTTTCATCACAACAACTGAAGGAAGTTCCTGTTCAGGAGGAACTATTTAGTAA
GGCTGAGCTGTTGGGTGAAAACTAATATGGGCGGATTATCCTTTAGACTTGCAACATCCACAGTTCTGGAATCGAGTTTTCGTATATCGT
TTTTACAATCTTTTAGTTGGGTCCATTGCATTCCCAGAGTTTTCTAGTCCTAGAAGAGATTGATATACTGGTCGAAAATATAGATACCTC
GTATTTTTGTTTTAACGTTTATTTCGAATTGAGTGTTAATGGAAATGATTAATATCATCTAGCTCAACTTGTTTAACAAAAAAAAAAAAG
CTCCACTAAATGTGGCCCACAAAAAAAAAATAAAAAAATCGAGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (18)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	6
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOS	suspension cultures	8026	2
Solanum lycopersicum	vSlycmRNA		8362	1
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	3

mRNA member sequences (34)

Alignment image suppressed for unigene with 34 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101549	GTP1/OBG - Molecular Function: GTP binding (GO:0005525) GTP-binding protein HSR1-related - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622)	77
2	119478	GTP-binding - Molecular Function: GTP binding (GO:0005525) GTP1/OBG - Molecular Function: GTP binding (GO:0005525) GTP-binding protein HSR1-related - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622)	15
5	131716	GTP-binding - Molecular Function: GTP binding (GO:0005525) GTP1/OBG - Molecular Function: GTP binding (GO:0005525) NGP1 N-terminal GTP-binding protein HSR1-related - Molecular Function: GTP binding (GO:0005525) - Cellular Component: intracellular (GO:0005622)	6

Preceding Unigenes (1)

Unigene	Build
SGN-U215221	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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