Sol Genomics Network

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This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577582 and SGN-U577760 in the current build, Tomato 200607 #2

Unigene SGN-U316211

Unigene Basic Information

Unigene ID:	SGN-U316211
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316211
mRNA sequence:	Length: 1267 bp

>SGN-U316211 Tomato 200607 #1 (29 members)
ATCAGCATAAAAGCCCTTTTAAGTCCTGGTTTCCCTTTGACAGTAGCGAGAATAGGGATTAATCAGTGTGGATCGGTGTTGGGGGATTGA
AGGACGGTAGCAGGGGAGTCATGGACCCTGCAGCTGTCGATAGGATTATTGAGAAGCTATTAGAAGTTCGATTATCGAAGCCTGGCAAGT
TGGTGCAGCTTTCCGAGTCTGAAATCAAGCAACTATGTGTTTCCTCTAGAGATATCTTCGTTAAACAGCCAAATCTACTTGAACTTGAAG
CACCCATCAAAATTTGCGGTGACATTCATGGGCAGTACAGTGATCTGTTGAGGCTTTTTGAATATGGTGGTTTTCCTCCGAAGGCTAACT
ACTTATTCTTGGGTGATTATGTAGATCGTGGGAAGCAGAGCTTGGAAACAATATGCCTCTTGCTTGCCTATAAGATCAAGTATCCTGAGA
ACTTTTTCTTGCTTAGAGGAAACCATGAATGTGCTTCTATAAATAGGATATATGGATTCTATGATGAGTGTAAGCGTCGGTTCAATGTGA
AACTATGGAAGTCCTTTACAGACTGTTTTAATTGTCTTCCTGTAGCAGCACTTATCGATGAGAAGATATTATGCATGCATGGGGGTCTGT
CCCCTGATCTTTCTAGTTTGGATCAGATTCGGAACTTACCACGTCCAACTGCCATCCCGGACACTGGTTTGCTTTGCGATTTACTTTGGT
CAGATCCTGGTAAAGATGTAAAGGGTTGGGGGATGAATGATAGGGGAGTTTCATACACCTTTGGTCCTGATAAAGTTTCTGAGTTTTTGT
CAAAGCATGACTTGGACCTTGTCTGTCGTGCCCATCAGGTCGTGGAGGATGGTTATGAATTCTTTGCTGACAGGCAGCTTGTCACCATTT
TTTCAGCTCCCAATTACTGCGGCGAGTTTGACAATGCTGGTGCTATGATGGGTGTTGATGAAAACTTGATGTGCTCTTTCCAAATTCTTA
AGCCAGCAGAGAAGAAAAATAAGTTTATGATGTGAGAAGATGTTTCCTACTTTTATAGAGGTCACCTTCTTCTCTGTCCTTGACATATAA
TGGATGCTGAGTTGAATATAGCTGTCCCTCTTGTTTTATTATTACTCAAGTTCTAGTGATTCGGGAGGATGTACTTGTTAAAATCCATTT
CAGCAACATTTGTGGTTCAAGTTTAAAACAAAAACCATACGTGGGTGTTTTTCAGTGAAATTATTGGGAGGAAATCTTTTTCAAAAAAAA
AAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	2
Solanum lycopersicum	LB	Leaf Mature leaves	3316	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	10
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	1
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (29)

Alignment image suppressed for unigene with 29 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 1 | blast: 2 | go: 1 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101370	Jacalin-related lectin	591
2	118468	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase - Molecular Function: hydrolase activity (GO:0016787) Metallophosphoesterase - Molecular Function: hydrolase activity (GO:0016787)	107
5	128995	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase - Molecular Function: hydrolase activity (GO:0016787) Metallophosphoesterase - Molecular Function: hydrolase activity (GO:0016787)	73

Preceding Unigenes (1)

Unigene	Build
SGN-U215542	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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