Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U583530 in the current build, Tomato 200607 #2

Unigene SGN-U316540

Unigene Basic Information

Unigene ID:	SGN-U316540
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316540
mRNA sequence:	Length: 2395 bp

>SGN-U316540 Tomato 200607 #1 (20 members)
GCTCACTCAAGAGTCCAACTCTACCCACCCTGACAAGTGACAATATCTATTTTTGTCTCAAATCCCCTACAAAACCCTCTGAACAGCTTC
TCCGCCGTCACTTACAGTCAATCTCCGCCACTATGCAAGCCCATTTGCTCTCCCCCACTATATACCCCGCCACCATCACAACCACCACCA
CCACCAGCCCCCTTTTCCCCAAATGTAGGACCCACTTAAGAAAACCACCCACTCTCACCATCCGAGCTTCCTCAACGGAAACATCGACTC
CACCAACACAGACCACTACCTCAACAGACCCATCTCAGCAACTCAACAAATACAGCAGCCGCATTACTCAACCCAAGTCACAGGGTGGTT
CACAGGCGATTCTCTATGGAGTAGGATTAACTGATGAGGATATGAACAAACCCCAAATTGGGATATCCTCTGTTTGGTATGAAGGCAACA
CTTGTAATATGCATTTGTTAAAGCTTGCTGAAGCTGTTAAAGAAGGGGTTACAGAAGCTGGCATGGTGGGGTTCAGGTTTAATACCATTG
GTGTTAGTGATGCTATTTCCATGGGGACTAGAGGCATGTGTTTTAGTTTGCAGTCAAGAGATTTGATTGCTGATAGTATTGAAACTGTCA
TGTCTGCTCAGTGGTATGATGGGAATATTGCCATTCCTGGATGTGATAAAAATATGCCAGGTACAATTATGGCGATGGGAAGACTAAACA
GGCCAAGTATCATGATATATGGTGGAACCATTAAGCCTGGTCATTTCCAAGGGCACACATTCGATATAGTGTCCGCTTTCCAGGTGTATG
GAGAGTATGTTAGTGGTGCTGTTAGTGATGAACAGAGGATGAATGTAGTTCGTAATTCATGTCCTGGTGCGGGGGCTTGTGGTGGAATGT
ATACAGCAAATACCATGGCATCTGCTATTGAGGCAATGGGCATGTCACTGCCTTATAGCTCTTCCACACCCGCTGAAGACTCACTAAAGT
TGGATGAGTGTCGCCTAGCGGGAAAATATCTTCTGGAATTATTAAAGATGGACTTGAAACCTCGAGATATCATCACAAAAAAGTCCCTTC
GAAATGCAATGGTAGTTGTCATGGCACTTGGTGGATCTACCAATGCCGTACTACATTTAATTGCTATTGCAAGGTCTGTTGGTTTGGAAT
TAACTCTAGATGACTTCCAAAAGGTTAGCGATGAGGTTCCTTTCCTTGCAGATCTGAAGCCTAGTGGAAAATATGTTATGGAGGATGTGC
ACAAGATTGGAGGTACACCCGCAGTCATTCGCCACCTGTTGGAGCTTGGGTATATGGATGGGGACTGTATGACTGTCACAGGAAAGACTC
TGGCTGAAAATGCAAAGCTATTTCCTTCTTTAGCTGAAGGTCAGCAAATTATAAGACCACTATCAAACCCCATCAAAGAAACAGGCCACA
TCCAGATATTGTACGGGAATCTTGCACCAGAGGGGAGCGTGGCAAAGATCACTGGAAAAGAAGGGCTATACTTTTCTGGCCCCGCCTTAG
TGTTTGAAGGAGAGGAGGCTATGCTTGCAGCTATCTCAGAAGATCCTTTAAGTTTTAAGGGAAAAGTTGTAGTCATTAGAGGAGAGGGAC
CTAAGGGAGGACCAGGTATGGCTGAAATGCTGACACCCACAAGTGCAATTATGGGTGCAGGTCTTGGGAAGGATGTTGCTTTACTTACTG
ATGGAAGATTTTCTGGAGGTTCTCATGGATACGTTGTGGGGCATATATGTCCTGAAGCACAGGAAGGAGGTCCAATTGGTCTTGTTCAAA
ATGGAGACATAATAACAATAGACATTCAGAAAAAGAAAATGGATGTTCAGTTATCAGACGAGGTGTTGGAACAGCGTAGAAAGAATTGGA
CACCCCCTGCATATAAGGCTGACCGAGGGGTTCTCTACAAGTATATAAAAAATGTGCAATCCGCTTCCAAGGGATGTGTTACCGATGAAT
AGAGAAGAAGCATATTTACCAAAACCAAAGAGTGAACCTGGGAAAGCCTGATGTTGCTTGCAGCTGCAATTGGGGCATCTGCACGGCTCG
TAGCCCTTTTATTATAGAGGTATCACATTTATGTTTTCAGGTGTAACTTTATATATTTTGTTTCTTTGAAAGTTGAGAGCTATGTTTTTC
TTTTCCCATTTTTCCTGCTCTGTATTTCTGGAACTCCCAGCTGTGATTAAAATTGTACAATGCTTGGTGAAATAATATTTGGTAGTAGAG
CAATCACTTCTACTTTGGAAATTCCCAAAAGTTTGTAATTATCTCTGAGATTGGTCACTGGCTAGGAGGTTTTCCAGACTTGCTCCAAGT
TTATTGATCAAGTTTCTCGGTATTCATGTCCAAATTCTTTCATAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	3
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (20)

Alignment image suppressed for unigene with 20 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101493	Fructose-bisphosphate aldolase class-I - Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332) - Biological Process: glycolysis (GO:0006096)	103
2	121736	Dihydroxy-acid and 6-phosphogluconate dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Dihydroxy-acid dehydratase - Molecular Function: dihydroxy-acid dehydratase activity (GO:0004160) - Biological Process: branched chain family amino acid biosynthesis (GO:0009082)	6
5	131955	Dihydroxy-acid and 6-phosphogluconate dehydratase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152) Dihydroxy-acid dehydratase - Molecular Function: dihydroxy-acid dehydratase activity (GO:0004160) - Biological Process: branched chain family amino acid biosynthesis (GO:0009082)	6

Preceding Unigenes (1)

Unigene	Build
SGN-U215301	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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