Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578219 in the current build, Tomato 200607 #2

Unigene SGN-U316628

Unigene Basic Information

Unigene ID:	SGN-U316628
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316628
mRNA sequence:	Length: 1585 bp

>SGN-U316628 Tomato 200607 #1 (26 members)
TTTCATCCATTTTCATAAATTTTCGAGTTCGGTTTCTGCAATTTTCTTACCTAAGAAAATGAGAGAGTGCATCTCCATCCACATTGGCCA
GGCCGGAATCCAGGTCGGAAACGCCTGCTGGGAGCTCTACTGCCTCGAACACGGTATCAAGCCTGATGGACAAATGCCCGGAGACGTCAC
TGTTGGAGGAGGAGATGATGCTTTCAACACCTTTTTCAGTGAAACGGGTGCTGGAAAGCATGTACCTCGTGCTGTTTTTGTAGATCTGGA
ACCTACTGTTATTGATGAGGTGAGGACCGGAACTTACCGTCAGTTGTTCCACCCTGAACAGCTCATTAGCGGCAAAGAAGATGCTGCTAA
CAACTTTGCCAGAGGACATTATACAATTGGGAAGGAAATTGTGGATCTGTGTCTTGATAGAATAAGGAAGTTAGCTGACAACTGCACTGG
GCTTCAAGGATTTTTGGTGTTCCATGCTGTTGGTGGGGGTACTGGTTCAGGGCTCGGTTCTCTGCTTCTTGAGAGGCTTTCTGTTGACTA
CGGAAAGAAATCCAAGCTTGGATTCACCATTTACCCTTCACCTCAGGTCTCTACTGCTGTAGTTGAGCCTTACAACTCTGTGCTCTCAAC
ACACTCGCTTCTTGAGCACACTGATGTTGCTATCCTTTTGGATAATGAAGCCATTTATGACATCTGCCGTAAATCTCTCGACATTGAAAG
ACCTACTTACACCAATCTTAACAGGCTTATTTCTCAGGTTATCTCATCGCTGACAGCTTCTCTGCGTTTCGATGGTGCTTTGAATGTGGA
TGTAAATGAGTTCCAAACTAACTTGGTTCCATACCCAAGGATTCATTTCATGCTTTCCTCATATGCGCCTGTGATCTCTGCTGAGAAGGC
CTACCATGAGCAACTTTCTGTTGCTGAAATTACTAATACTGCATTTGAGCCATCGTCTATGATGGTCAAGTGTGACCCACGCCATGGGAA
ATACATGGCCTGCTGCTTGATGTACAGAGGTGATGTTGTGCCCAAGGATGTGAACGCTGCGGTAGCCACAATTAAGACTAAGAGGACCAT
TCAGTTTGTGGACTGGTGCCCTACTGGGTTCAAATGTGGTATCAATTACCAGCCACCAACTGTTGTCCCTGGTGGAGACTTAGCCAAGGT
GCAGAGGGCTGTTTGTATGATTTCAAACTCGACTAGTGTTGCTGAGGTCTTCTCAAGAATTGACCACAAGTTTGATTTGATGTACGCGAA
GAGGGCTTTTGTTCACTGGTATGTGGGTGAAGGTATGGAGGAAGGAGAGTTCTCTGAGGCTAGAGAAGATTTGGCTGCGCTTGAAAAGGA
CTATGAGGAAGTTGGATGTGAGTCTGGTGACGGTGAAGATGATGAAAATGAAGAGTATTAGGTTCATTTCTCCATGTATTTTGCTTGGAT
GATTATGTAGCCAATGGTCTCATTGGTACCTAAAATTAGAAGTGGTTCATATTCAGTAGGTTCATGTATTTGATTTAACTTTCTTCTGAA
AACTTACTTTGCTATTTTCAACTTCTTAATCTCAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (12)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	6
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	3
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	4
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (26)

Alignment image suppressed for unigene with 26 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 2 | blast: 2 | go: 8 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101452	Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ GTPase Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	140
2	118444	Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	138
5	129035	Alpha tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ GTPase Tubulin - Molecular Function: structural molecule activity (GO:0005198) - Cellular Component: microtubule (GO:0005874) - Biological Process: microtubule-based movement (GO:0007018) Tubulin/FtsZ C-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: protein complex (GO:0043234) - Biological Process: protein polymerization (GO:0051258)	55

Preceding Unigenes (1)

Unigene	Build
SGN-U215336	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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