Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U566348 in the current build, Tomato 200607 #2

Unigene SGN-U316717

Unigene Basic Information

Unigene ID:	SGN-U316717
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316717
mRNA sequence:	Length: 2259 bp

>SGN-U316717 Tomato 200607 #1 (25 members)
CTCGTGCGGCACGAGGTCAAAGCCTCCAACAACTTTTGAGTTTTGCAGTCAGTCTATTTGTTGCTCTCATAAAAATGGCGTCCATCCCTT
CTCCTCACACTGCCCGCCTCAATTCTCTCCTCTCTTCTTCTTCCGTCAATCACAACAAACCTTCAAATCTCTCTTTCCTCCATGCCTCCT
CAAATCCATCTTCCATCAAACTCCTTCACTCTGTTTCACCATCAATTTCTTCTTCTTCGACGACGGTGATTTGTAATGTCCTCAAAACTG
TTGAATCTGCTGACATCTCCCTCTCTAGAGATCTTCACGGCGTTGTATCCACTTCCAAACCAACCATTCTCGTATCCGAGAAGCTTGGAG
AGGCGGGTCTAGATTTGCTCAAGAGTTTCGGCAACGTGGATTGTTCTTACGACTTGTCTCCTCAGGATCTCTGCGCTAAGATCTCTCTGT
GCGACGCGCTCATCGTCCGTAGTGGTACCAAGGTGACCCGTGACGTGTTTGAGGCTGCTCAGGGAAGACTCAAGGTCGTGGGGAGAGCTG
GTGTTGGTATAGACAATGTCGATCTGCAAGCTGCAACTGAATTTGGTTGCCTCGTCGTTAACGCACCCACAGCTAATACTATTGCTGCAG
CTGAGCATGGAATCGCTTTGCTCACCTCCATGGCCCGTAACGTTGCTCAGTCTGATGCCTCCATGAAAGCTGGAAAATGGCTGCGCAGCA
AGTATGTGGGTGTTTCTCTTGTTGGGAAAACATTAGCTATTATGGGATTTGGTAAAGTTGGTTCCGAGGTTGCTAGACGTGCAAAAGGCC
TCGGTATGCATGTTATTGCCCATGATCCTTATGCTCCTGCTGACAGAGCTCGTGCTATTGGAGTCGATTTGGTTTCATTTGAGCAGGCCA
TATCTACTGCTGACTTCATCTCACTCCACATGCCTCTCACACCTGCTACGAACAAGGTATTCAATGATGACACTTTTGCAAAGATGAAGA
ATGGAGTCAGACTAATAAACGTTGCTCGAGGAGGTGTTATCGACGAGGATGCATTAGTTAGAGCCCTTGACAGTGGAATAGTTGCTCAGG
CAGCACTTGATGTGTTTACTGTGGAGCCCCCACCAAAAGATAGCAAACTAGTGCAGCATGAGAATGTTACTGTTACACCTCATCTTGGAG
CTAGCACTAAAGAAGCACAGGAAGGAGTTGCAATTGAAATAGCTGAGGCTGTTGTTGGTGCTCTAAATGGGGAACTTTCTGCTACCGCTG
TGAATGCTCCAATGGTCCCTCCTGAGGTTTTGTCCGAGTTGGCTCCTTACGTCGTGCTCGCTGAGAAAGTGGGTAGATTAGCAGTACAGC
TAGTGACTGGTGGCAGTGGGATTCAGAGTGTGAAAGTGGTTTACAAATCGGCTAGGGACCCTGACAGCTTGGACACTAGACTTCTTCGAG
CCATGGTTACAAAAGGCATTATTGAGCCTATATCGGATACAATCATCAACCTTGTAAATGCGGATTTCAGTGCAAAGCAGAAGGGTCTTC
GCATTAGTGAAGAAAGGATTATTGTTGATTCATCTCCAGAGTACCCTGTTGAGTCAATCCAGGTGCAGATTAGTAATGTGCAATCAAGAT
TTGCAAGTGCGTTATCAGAGAATGGAAACATTAGCATTGAGGGTAGAGTGAAGTATGGAGTTCCCCATCTTACACGTGTTGGACCATTTA
GCGTTGATGTGAGCTTGGAGGGTAACCTCATCCTTTGCAAACAAGTGGATCAACCTGGTATGATAGGGAAAGTTGGGAACATACTTGGTG
AGAGTAATGTGAATGTGAGTTTTATGAGTGTTGGGAGAACGGTGAAGGGAAAGCAGGCAATTATGGCAATTGGAGTAGACGAAGAACCAG
ACAAGGATACTCAGAAGAAGATTGGAGAGGTGTCTGCAGTTGAAGAATTTGTCTTCCTTAAACTATAGTCAATATTGCTGGCTAATGGGA
TGGAATGGAACTTGTTATTACGTATTATTATCAAGTAAAAGATAAAAAGGGTGTAATGAAATTTTAGCTGTGTCTGCTTAATGTGTTGAT
CAAATTAATTTACAAGGAACACTTATCCTCAGTCTTTTATGATGTGTGCTGATCCTGCTCTTCTACTCAGGTAAAACCTAAAAATAAAGA
AATACTTTATCGCAAAGGTTATGGTGTTAGTTATCAGTGTGATACTTATTCCTATCTTCTCTTAATAAAAGCACTGTAGGGGCGGTCACC
CAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	3
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	cTOS	suspension cultures	8026	1
Solanum lycopersicum	vSlycmRNA		8362	1

mRNA member sequences (25)

Alignment image suppressed for unigene with 25 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (1)

Annotations (manual: 0 | blast: 2 | go: 7 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101571	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding - Biological Process: L-serine biosynthesis (GO:0006564) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616)	70
2	119461	D-3-phosphoglycerate dehydrogenase - Molecular Function: phosphoglycerate dehydrogenase activity (GO:0004617) - Biological Process: L-serine biosynthesis (GO:0006564) D-isomer specific 2-hydroxyacid dehydrogenase catalytic region - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) - Molecular Function: NAD binding (GO:0051287) Amino acid-binding ACT - Biological Process: metabolism (GO:0008152) - Molecular Function: amino acid binding (GO:0016597) D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding - Biological Process: L-serine biosynthesis (GO:0006564) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616)	15
5	129795	D-3-phosphoglycerate dehydrogenase - Molecular Function: phosphoglycerate dehydrogenase activity (GO:0004617) - Biological Process: L-serine biosynthesis (GO:0006564) D-isomer specific 2-hydroxyacid dehydrogenase catalytic region - Biological Process: metabolism (GO:0008152) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616) - Molecular Function: NAD binding (GO:0051287) Amino acid-binding ACT - Biological Process: metabolism (GO:0008152) - Molecular Function: amino acid binding (GO:0016597) D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding - Biological Process: L-serine biosynthesis (GO:0006564) - Molecular Function: oxidoreductase activity acting on the CH-OH group of donors NAD or NADP as acceptor (GO:0016616)	15

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U215839	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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