Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been split into SGN-U577550 and SGN-U581183 in the current build, Tomato 200607 #2

Unigene SGN-U316788

Unigene Basic Information

Unigene ID:	SGN-U316788
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	316788
mRNA sequence:	Length: 1466 bp

>SGN-U316788 Tomato 200607 #1 (25 members)
CTGGCTGGGTAGGTGCTACCATTTTCAGTGTAAAAGGTTTGTTCCCCCTGGAAGAAAAAAGAAAAGAAAAAAGGTAGAGATATGTCAGGT
TTATATAATCCCAACTTTTCACCTGCCAGAGCTGCTTCTCCCCAGATTAGAAGTACACCAGATGTTGACAGTAATCTCTACTTGTCAGAG
CTGTTGGCGGAACATCAAAAGCTTGGACCTTTTATGCAAGTTCTTCCTATATGTAGCAGACTCTTGAATCAAGAGATTTTAAGGGTTTCC
GGAATGCTGCCGAACCAAGGATTTGGTGAACTAGACAGATTGCGACATAGAAGTCCCAGTCCTATGGGTTCAGCAAACCTTATGTCAAAT
GTTACTGGAGCAGGATTGAGTGGTTGGAATGGACTTCCCCAGGAGAGGTTGAGTGGACCTCCTGGAATGTCAATGGACTGGCAAGGGGCC
CCAGCAAGTCCTAGTTCGTACACTGTGAAAAGAATATTGCGGTTAGAAATTCCAGTCGACACTTATCCAAATTTTAATTTTGTTGGGCGA
CTTCTTGGCCCCCGAGGGAATTCATTGAAACGGGTGGAAGCTACCACAGGATGCCGTGTTTTTATTAGAGGAAAAGGCTCGATAAAAGAT
CCAGACAAGGAGGAGAAACTAAGGGGAAGACCAGGATATGAGCACCTGAATGAACCACTCCACATTTTAATTGAAGCTGATTTGCCAGCC
AGCGTTGTGGATATTAGATTGAGACAGGCACAGGAAATCATAGAGGAGTTGCTCAAGCCGGTGGATGAATCAGAGGACTATATAAAGAGA
CAGCAATTGCGTGAACTGGCGATGCTAAATTCAAATTTCAGGGAAGAGAGCCCTGGACCAAGTGGCAGTGTCTCTCCTTTCAATACTAGT
GGCATGAAACGTCCCAAGACTGGTCGTTGAGAGGAATGAGAAATTGAAGTTGTTGATGCTAAGAGAGGTTTGCACTCCTCGGAGATAATG
AAAGGCATGCCTGGGCATTCCTCTCAACATACATCATATCCGCATCACTACCTAATCCCAAGCTATAAATAGACACAGGTCCTTGCGGGT
GATTTTTGGTTTGCTTTTGGGTTTTATTTATTTTTTCAACTACAGAAATGAAAAAGAGTAAAAAGGAAAATTAGAACTTCTGGTTTATAC
AGTTGGCTTTTTTATTTAGGTTTGGTCTTGTCAGTCCCTTGTAAACTTCATTGATTTATTCTTGTTTGGTAATTGTAGTGTGAAATATGC
TGTTATTGGTACATGGCAGCATTAGCAGTTTGAAGCCAATAGGTCTTTCCTTCATTATGTTGGAGTCGTACATTTGTGCAACTATTATCA
AAGAGACACCAATATTGGTGCTTTGACTGGAGTTGGATTTATGTATGAATATACATATTAGTGCAACATGTAATATGTTGAAATGCCACT
GTATTTTAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	4
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	5
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOS	suspension cultures	8026	3

mRNA member sequences (25)

Alignment image suppressed for unigene with 25 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (5)

Annotations (manual: 1 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101765	KH - Molecular Function: nucleic acid binding (GO:0003676)	39
2	118860	KH - Molecular Function: nucleic acid binding (GO:0003676)	27
5	129778	KH - Molecular Function: nucleic acid binding (GO:0003676)	15

Preceding Unigenes (1)

Unigene	Build
SGN-U215916	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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